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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g64020.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 377aa MW: 41848.2 Da PI: 6.7 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34 | 6.2e-11 | 131 | 161 | 4 | 34 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeek 34 k err+++NReAAr+sR+RKka++++Le+ LOC_Os01g64020.2 131 AKTERRLAQNREAARKSRLRKKAYVQNLETS 161 799*************************974 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-6 | 128 | 204 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.278 | 130 | 174 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 5.6E-8 | 131 | 162 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 4.82E-7 | 132 | 175 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 9.5E-8 | 132 | 176 | No hit | No description |
CDD | cd14708 | 3.83E-21 | 132 | 184 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 135 | 150 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 9.1E-30 | 213 | 287 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 377 aa Download sequence Send to blast |
MIQSTLISCL PTAHCCLSLP QLMAEQGNSQ SVGSTTDSSS AQNTMPQMEL VSPASIRASS 60 EHQHQQQQPG QEVMMVTTDD YSYKPGLAAA SPSFQQQHQL QHHQQQQLHG GGDHDKRKHG 120 STRKDGKSVD AKTERRLAQN REAARKSRLR KKAYVQNLET SRVRLQQIEQ ELQRARSQGL 180 FLGGCRAAGD MSSGAAMFDM EYARWLDDDS KRLTDLRGGL QAHLLDTNLG LIVEECMQHY 240 DELFQLKAAL ARSDVFHLLT GTWATPAERC FLWMGGFRPS DLLKILIQQL DPLTEQQMLG 300 IYSLQQSSEQ AEEALAQGLQ QLHQSLADTV AAGTLNDGPG VPNYMSLMAI ALDKLASLES 360 FYQQVRQQLS IVIPFR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.42388 | 0.0 | callus| flower| leaf| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32986547 | 0.0 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250|UniProtKB:Q7X993, ECO:0000269|PubMed:22353606}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g64020.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g64020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101338 | 0.0 | AK101338.1 Oryza sativa Japonica Group cDNA clone:J033034J12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616943.1 | 0.0 | transcription factor LG2 isoform X2 | ||||
Swissprot | Q5N7C7 | 0.0 | LG2_ORYSJ; Transcription factor LG2 | ||||
TrEMBL | A0A0D3EWJ2 | 0.0 | A0A0D3EWJ2_9ORYZ; Uncharacterized protein | ||||
STRING | OMERI01G34450.1 | 0.0 | (Oryza meridionalis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.2 | 3e-95 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g64020.2 |
Publications ? help Back to Top | |||
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