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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g62920.1 | ||||||||
Common Name | LOC4324855, Os01g0848400, OsJ_04077, OSNPB_010848400, P0005H10.27, qSH1, qSH-1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | TALE | ||||||||
Protein Properties | Length: 613aa MW: 65175.6 Da PI: 7.9812 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 30.6 | 5.6e-10 | 390 | 427 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + LOC_Os01g62920.1 390 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 427 554459******************************88 PP | |||||||
2 | BELL | 97.3 | 1.3e-31 | 254 | 323 | 3 | 72 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +e q kk+kL+s++eeV+krY+qy++q+q+v++sFe+vag +a+p+++lAl+a+++hF+cLk +i +q+ LOC_Os01g62920.1 254 AEQQWKKTKLISMMEEVCKRYRQYYQQVQAVMASFETVAGFSNAAPFAALALRAMAKHFKCLKSMILNQL 323 5899***************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.1E-35 | 179 | 321 | IPR006563 | POX domain |
Pfam | PF07526 | 1.9E-36 | 184 | 319 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 368 | 431 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.43E-13 | 371 | 432 | No hit | No description |
SMART | SM00389 | 7.4E-11 | 371 | 435 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.06E-17 | 373 | 440 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 374 | 435 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 6.5E-19 | 388 | 427 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009047 | anatomy | stem | ||||
PO:0007010 | developmental stage | whole plant fruit ripening stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 613 aa Download sequence Send to blast |
MSSAAGGGGY GGGQGGGAEH HHHHHGHAGH LLLHHHPQHV AGAAVAAAAA AAGGQMYHVP 60 QHSRREKLRF PPDAGDSPPP HGHGHGHAPQ QQQQHGSWPP PPAFYSYASS SSSYSPHSPT 120 LAQAQLVAHG LAPPLPQIPT QNFSLSLSSA SSNPPPPQAQ PRRQLGGLAQ ATGPFGPFTG 180 YAAVLGRSRF LGPAEKLFEE ICDVGGAASH VDRTISDEGL LDADPMDGVD HDVVDHDLGG 240 ADRAAADAGP ISGAEQQWKK TKLISMMEEV CKRYRQYYQQ VQAVMASFET VAGFSNAAPF 300 AALALRAMAK HFKCLKSMIL NQLRNTSNKV AVKDGLNKEI AVFGLAGGSS GGAGLQRANS 360 ASAFGQPHNI WRPQRGLPER AVSVLRAWLF EHFLHPYPTD GDKQMLAKQT GLTRNQVSNW 420 FINARVRLWK PMVEEIHNLE MRQMHKHSVV DKGQHSVHHQ AQHSSQCSGN PSVPSDSHPG 480 QSSSITRNHN TAASQGFPDE LSQMSQSIQG QVSFAYNGLT SQHNIASPHH QHQQVGGVGI 540 GGGNGGVSLT LGLHQNNRVC IAEPLPAALP ANLAHRFGLE EVSDAYVMSS FGGQDRHFGK 600 EIGGHLLHDF VG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrm_A | 9e-17 | 377 | 435 | 5 | 63 | Homeobox protein Meis2 |
4xrm_B | 9e-17 | 377 | 435 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 7e-17 | 377 | 434 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 7e-17 | 377 | 434 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 8e-17 | 377 | 435 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 8e-17 | 377 | 435 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.19639 | 0.0 | flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 19352100 | 0.0 | ||||
Expression Atlas | Q941S9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g62920.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g62920 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB071331 | 0.0 | AB071331.1 Oryza sativa Japonica Group qSH-1 mRNA for qSH-1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015641948.1 | 0.0 | BEL1-like homeodomain protein 9 | ||||
TrEMBL | A9XWP8 | 0.0 | A9XWP8_ORYSI; Putative transcription factor qSH-1 | ||||
TrEMBL | A9XWQ2 | 0.0 | A9XWQ2_ORYSA; Putative transcription factor qSH-1 | ||||
TrEMBL | A9XWR3 | 0.0 | A9XWR3_ORYRU; Putative transcription factor qSH-1 | ||||
TrEMBL | A9XWS0 | 0.0 | A9XWS0_ORYNI; Putative transcription factor qSH-1 | ||||
TrEMBL | A9XWS1 | 0.0 | A9XWS1_9ORYZ; Putative transcription factor qSH-1 | ||||
TrEMBL | Q941S9 | 0.0 | Q941S9_ORYSJ; Os01g0848400 protein | ||||
STRING | ONIVA01G42140.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2528 | 38 | 81 | Representative plant | OGRP133 | 16 | 172 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27990.1 | 8e-58 | BEL1-like homeodomain 8 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g62920.1 |
Entrez Gene | 4324855 |
Publications ? help Back to Top | |||
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