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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g62190.1 | ||||||||
Common Name | LOC9272517, Os01g0839100, OSNPB_010839100, P0031D11.27, P0408C03.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 17945 Da PI: 5.0232 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 47 | 69 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+F++ L H +H LOC_Os01g62190.1 47 FECKTCSKRFPSFQALGGHRTSH 69 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 11.5 | 0.00093 | 96 | 118 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C Cg Fs L H+r+H LOC_Os01g62190.1 96 HECAVCGVEFSMGQALGGHMRRH 118 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.12E-6 | 43 | 71 | No hit | No description |
Pfam | PF13912 | 3.7E-12 | 46 | 69 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 47 | 69 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.429 | 47 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 49 | 69 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.31E-6 | 94 | 122 | No hit | No description |
Pfam | PF13912 | 7.4E-12 | 95 | 120 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.3E-4 | 95 | 122 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SMART | SM00355 | 0.89 | 96 | 118 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.99 | 96 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 98 | 118 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MTITREEAES KEMESLRVHA SALLSLSSPA ASASQPTSSS STTEGVFECK TCSKRFPSFQ 60 ALGGHRTSHT RLQAKLLSDP AAAAAAAAER DRARVHECAV CGVEFSMGQA LGGHMRRHRG 120 ETGTTTVVLA DADDSGGATV PQPPEPMPDL NYPPLEDAGD GSEPELLNLL V* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10411 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q5NA09 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g62190.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g62190 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108227 | 0.0 | AK108227.1 Oryza sativa Japonica Group cDNA clone:002-140-F08, full insert sequence. | |||
GenBank | AP003231 | 0.0 | AP003231.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0031D11. | |||
GenBank | AP003241 | 0.0 | AP003241.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0408C03. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY077725 | 0.0 | AY077725.1 Oryza sativa C2H2 zinc finger protein (ZFP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015634661.1 | 1e-121 | zinc finger protein ZAT8 | ||||
TrEMBL | Q5NA09 | 1e-120 | Q5NA09_ORYSJ; C2H2 zinc finger protein | ||||
TrEMBL | Q8S9G9 | 1e-120 | Q8S9G9_ORYSA; C2H2 zinc finger protein | ||||
STRING | OS01T0839100-01 | 1e-121 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 9e-25 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g62190.1 |
Entrez Gene | 9272517 |