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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g60520.1 | ||||||||
Common Name | LOC107276287, Os01g0820700, OSNPB_010820700, P0703B11.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 284aa MW: 31036.9 Da PI: 6.2817 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 68.5 | 9.7e-22 | 71 | 131 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnhe 59 Dg+ WrKYGqK++k+s fpr YYrC+++ +C + k v++++ +dp + +tY+ eH+++ LOC_Os01g60520.1 71 DGHLWRKYGQKNIKDSAFPRLYYRCSYRedrQCLASKLVQQENdDDPPLYRVTYTYEHTCN 131 9**************************99999*******987516899***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-22 | 61 | 131 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.15E-22 | 64 | 132 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.3E-33 | 69 | 132 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.6E-24 | 71 | 130 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.812 | 71 | 133 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MASPRLKREQ SFDFEEASAQ EAVGSASASY SPPGGGGVFG ISPPESSPRD GRKRRKDRPS 60 LVKHTFTPHF DGHLWRKYGQ KNIKDSAFPR LYYRCSYRED RQCLASKLVQ QENDDDPPLY 120 RVTYTYEHTC NTTPVPTPDV VAEQPPPGAA GDAYLLRFGS SAGGGGGGAH QQQTERERQQ 180 QNTARRRPFM MLSFDSSSSH QLHEQPHAFP PDGQLPATAA AASPSSFTAA EALAAPPLTT 240 TMNDGGDLFS TWDALRYGLD YDHGHLGNHV YLPDDCNGGD DNY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-15 | 71 | 130 | 10 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 56 | RKRRKD |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q5QMC1 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g60520.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g60520 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003302 | 0.0 | AP003302.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0703B11. | |||
GenBank | AP003348 | 0.0 | AP003348.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485B12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644112.1 | 0.0 | probable WRKY transcription factor 2 | ||||
TrEMBL | A0A0E0N481 | 0.0 | A0A0E0N481_ORYRU; Uncharacterized protein | ||||
TrEMBL | I1NSS8 | 0.0 | I1NSS8_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q5QMC1 | 0.0 | Q5QMC1_ORYSJ; Os01g0820700 protein | ||||
STRING | ORUFI01G38660.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0820700-00 | 0.0 | (Oryza sativa) | ||||
STRING | ORGLA01G0291800.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11529 | 24 | 33 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22570.1 | 1e-18 | WRKY DNA-binding protein 38 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g60520.1 |
Entrez Gene | 107276287 |