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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g54930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | VOZ | ||||||||
Protein Properties | Length: 430aa MW: 48111.8 Da PI: 4.8801 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 431 | 1.7e-132 | 130 | 347 | 1 | 217 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwna 92 p p+afl+pkcalwdc+rpaqgse++qdycs++ha+la++e g+pgt+pv+rp+gidlkdg+lfaalsak+qgk+vgip+cegaatakspwna LOC_Os01g54930.1 130 PVPAAFLRPKCALWDCPRPAQGSERWQDYCSMYHADLAVKEeGPPGTMPVIRPRGIDLKDGPLFAALSAKIQGKHVGIPVCEGAATAKSPWNA 222 89*************************************9879************************************************** PP VOZ 93 aelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrl 185 +elfdl ++ege+irewlffdkprrafesgnrkqrslpdy+grgwhesrkqvmk+fgglkrsyymdpqps+s+ewhlyeyein++da+alyrl LOC_Os01g54930.1 223 PELFDLYIFEGESIREWLFFDKPRRAFESGNRKQRSLPDYNGRGWHESRKQVMKDFGGLKRSYYMDPQPSNSYEWHLYEYEINDCDAFALYRL 315 ********************************************************************************************* PP VOZ 186 elklvdekksakgkvskdsladlqkklgrlta 217 e+k++d+kk+ak+k+++++l+++q++++rl+a LOC_Os01g54930.1 316 EFKSSDAKKTAKSKLACNPLNEIQQQMVRLSA 347 ******************************97 PP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009816 | Biological Process | defense response to bacterium, incompatible interaction | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048578 | Biological Process | positive regulation of long-day photoperiodism, flowering | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MKPEPPEEAV ASPADLTVPQ QPQSPGQGVL ASGGGMLAPA AAAVFHDQMY YVNQELTVED 60 FLYDDNYKMY LPGYNSDVLN NLESTGQLEY PQFNLPQELP PNAYLDTSNC GQNAGDVFLH 120 MSDLLNTMSP VPAAFLRPKC ALWDCPRPAQ GSERWQDYCS MYHADLAVKE EGPPGTMPVI 180 RPRGIDLKDG PLFAALSAKI QGKHVGIPVC EGAATAKSPW NAPELFDLYI FEGESIREWL 240 FFDKPRRAFE SGNRKQRSLP DYNGRGWHES RKQVMKDFGG LKRSYYMDPQ PSNSYEWHLY 300 EYEINDCDAF ALYRLEFKSS DAKKTAKSKL ACNPLNEIQQ QMVRLSADSP VENKRSARSR 360 TKANPNDINS NIYLVQNTTV QGSIPNAYQA VSQPDQMTYL NGNVVYGPHL PYGYSTERSD 420 FYWSSNDGA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18072 | 0.0 | callus| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297597629 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g54930.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g54930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241765 | 0.0 | AK241765.1 Oryza sativa Japonica Group cDNA, clone: J065205E23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621735.1 | 0.0 | transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-125 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | A0A0D3EU29 | 0.0 | A0A0D3EU29_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0D9YF22 | 0.0 | A0A0D9YF22_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0FT90 | 0.0 | A0A0E0FT90_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0N2I8 | 0.0 | A0A0E0N2I8_ORYRU; Uncharacterized protein | ||||
STRING | OGLUM01G35310.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI01G34290.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA01G35590.1 | 0.0 | (Oryza nivara) | ||||
STRING | OBART01G31110.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 | Representative plant | OGRP2327 | 13 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-120 | vascular plant one zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g54930.1 |
Publications ? help Back to Top | |||
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