PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g52090.1
Common NameOs01g0718900, OSNPB_010718900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 323aa    MW: 35763.6 Da    PI: 5.2783
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g52090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix33.31.2e-1069165186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrt.......sessstcpyf 82 
                       +W++  + aL++a  ++  r +r++l++  W evs+      ++ +   s +qC+++++ l+k+y+k+ke+++  +        +s s++ yf
  LOC_Os01g52090.1  69 EWSEGSTFALLDAWGDRFVRAGRRSLRADEWLEVSRLAaaaaSRPPGYYSEQQCRNRIDTLRKKYRKEKERMRLAArrpdrpdRPSPSKWIYF 161
                       5**********************************9997776444455799*******************99865311111113456788888 PP

          trihelix  83 dqle 86 
                       d+++
  LOC_Os01g52090.1 162 DKMQ 165
                       8886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.8E-1768167No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009049anatomyinflorescence
PO:0001083developmental stageinflorescence development stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MDDGAAPAAA AAAELPSPSP SSSGTSPSPR SKRRRTDRYA QGFEFAPRPA PATATATAPA  60
PTPARGTPEW SEGSTFALLD AWGDRFVRAG RRSLRADEWL EVSRLAAAAA SRPPGYYSEQ  120
QCRNRIDTLR KKYRKEKERM RLAARRPDRP DRPSPSKWIY FDKMQSLMCP PPLPLQPPVV  180
TRRRDTQPVP RQSWGLDAAE YVLGGCENAG TRDSGSGAEL GEEQPNEAGA GKGEDFELLV  240
ESIRKLGDVY ERVESSKRQH MAEVEWLRRD LQRDLEVRRR EILEKAQAEI ARLTEEDGEE  300
GDLKEGEGDD NKRFGDDGGG EE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.658970.0callus| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567642440.0
Expression AtlasA0A0P0V7G6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g52090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g52090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034530.0AP003453.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0480C01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015623327.10.0uncharacterized protein LOC4324693
TrEMBLA0A0P0V7G60.0A0A0P0V7G6_ORYSJ; Os01g0718900 protein
STRINGOS01T0718900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80902224
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.19e-26Trihelix family protein