PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g48320.1
Common NameLOC4325908, Os01g0674000, OsJ_02978, OSNPB_010674000, P0485G01.27
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 333aa    MW: 35919.3 Da    PI: 10.0969
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g48320.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.11.1e-1318104186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       +W++ e+ aL++a  ++  +l+rg+l++p+W+ev++++       ++r   r+ +qCk++ + l+k+yk+++++         s++ ++++l+
  LOC_Os01g48320.1  18 CWSDGETAALVDAWGRRYVDLNRGSLRQPQWREVAEAVnarpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGTP------SSWYFYRDLD 104
                       7*******************************************999999********************9998775......4588888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.8E-2516105No hitNo description
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009089anatomyendosperm
PO:0007042developmental stagewhole plant fruit formation stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MDGKPPPPNP NLPYREDCWS DGETAALVDA WGRRYVDLNR GSLRQPQWRE VAEAVNARPG  60
ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGTPSSWYFY RDLDMLVGPT LSAAAAAGGG  120
GSAKKPSPPR GLPMMRRRLE SPSRSPSPPS PTPAVALPLP NYRQASNLPS AGLLFNKMAA  180
AAAAESDSED GYNNPNNNYE DDEDDGSQQS ASRSVSSRSG GVAAAGAGGG GVSSSKRKRG  240
GGGGGGFGEL ARAVETFAEM YERMEFAKQR HAEEMERQRI KFLKDLELKR MQAFVDVQLQ  300
LAKAKHGKHP DGATEMLMSL AALPFLSTPA YL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.63770.0callus| flower| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567647650.0
Expression AtlasQ8LJG7-
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g48320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g48320
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0993960.0AK099396.1 Oryza sativa Japonica Group cDNA clone:J013000M14, full insert sequence.
GenBankAP0032640.0AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614545.10.0trihelix transcription factor ASIL2
SwissprotQ9LJG86e-31ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLQ8LJG70.0Q8LJG7_ORYSJ; 6b-interacting protein 1-like
STRINGOS01T0674000-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14180.12e-27sequence-specific DNA binding transcription factors