![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g48290.1 | ||||||||
Common Name | LOC107278438, P0007F06.34, P0485G01.24 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 176aa MW: 17316.2 Da PI: 10.429 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 91.7 | 5.9e-29 | 83 | 137 | 5 | 58 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGg.grrkn 58 l+cprC s++tkfCy+nny++ qPr++C++CrryWt+GGalr v + grr+ LOC_Os01g48290.1 83 PLPCPRCGSRETKFCYFNNYNVRQPRHLCRSCRRYWTAGGALRRVASASpGRRRP 137 689*****************************************98766255544 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.1E-26 | 83 | 136 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 25.583 | 84 | 138 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 6.0E-17 | 86 | 124 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 86 | 122 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 176 aa Download sequence Send to blast |
MANLPSTAAA AAADASGFKL FGKVIQPDGQ RGVEESAAAQ APPHPHPPAP PVMEAAAAAA 60 GTSQTLQAAG GGGGGGGGGG GEPLPCPRCG SRETKFCYFN NYNVRQPRHL CRSCRRYWTA 120 GGALRRVASA SPGRRRPRPS AARSAAAAAA SASAASPPAA VPAASEGAES VDSRS* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.100818 | 2e-34 | flower |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32981106 | 2e-34 | ||||
Expression Atlas | Q8W0I0 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g48290.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g48290 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003223 | 0.0 | AP003223.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0007F06. | |||
GenBank | AP003264 | 0.0 | AP003264.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0485G01. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619286.1 | 1e-118 | dof zinc finger protein 5-like | ||||
TrEMBL | Q8W0I0 | 1e-116 | Q8W0I0_ORYSJ; DNA-binding protein Dof2-like | ||||
STRING | OS01T0673700-00 | 1e-115 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14716 | 16 | 20 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G29160.1 | 1e-19 | Dof family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g48290.1 |
Entrez Gene | 107278438 |