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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g47560.1 | ||||||||
Common Name | LOC4326856, Os01g0665500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 581aa MW: 60890.5 Da PI: 9.274 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.8 | 4.7e-33 | 370 | 427 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+ LOC_Os01g47560.1 370 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 427 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.5E-35 | 354 | 429 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-29 | 361 | 429 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.535 | 364 | 429 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.6E-39 | 369 | 428 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-26 | 370 | 427 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 581 aa Download sequence Send to blast |
MGVAVHWRRA GDSLHMGGEP RARAEAAWAA ALPAALVALV RDTATYTRMM HRLRMETPRG 60 PTCQLDPCCC CCTAHVIPPP PPVSRTHATR RDAEASVPPP PASAAVSSRS DGTGQMAAGV 120 TLACAAPPPL RAPRASDGGR RRGVVKGGAG TDTCRSPQRL NVRPRERERV RACVRARAKN 180 HEHGQRRREA AVDPAMSGEY QFQDELAPLF ARPGGGAGEM QMLPSSWFAD YLQAGTPMQM 240 DYDLMCRALE LPVGEDVKRE VGVVDVVAAG GGGAPPLTPN TTSSMSTSSS EGVGGGGGGG 300 AGAGAGEEES PARCKKEEDE NKEEGKGEED EGHKNKKGSA AKGGKAGKGE KRARQPRFAF 360 MTKSEVDHLE DGYRWRKYGQ KAVKNSPYPR SYYRCTTQKC PVKKRVERSY QDPAVVITTY 420 EGKHTHPIPA TLRGSTHLLA AHAQAAAAAA AAHQLHHHHG HHGHHGMAPP LPLGSGAAAQ 480 FGRSSGIDVL SSFLPRAAAA HHGMTTMGGA AATTTTSHGL NSAISGGGGV SSETTSAVTV 540 AASAQPSSPA ALQMQHFMAQ DLGLLQDMLL PSFIHGTNQP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-27 | 360 | 430 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-27 | 360 | 430 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.28828 | 0.0 | callus| flower| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 33519197 | 0.0 | ||||
Expression Atlas | Q0JKL7 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00440 | DAP | Transfer from AT4G18170 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g47560.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g47560 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY341855 | 0.0 | AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds. | |||
GenBank | AY870604 | 0.0 | AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015640235.1 | 0.0 | uncharacterized protein LOC4326856 isoform X1 | ||||
TrEMBL | Q0JKL7 | 0.0 | Q0JKL7_ORYSJ; Os01g0665500 protein | ||||
STRING | ORUFI01G28580.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 2e-47 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g47560.1 |
Entrez Gene | 4326856 |