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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g39020.1 | ||||||||
Common Name | B1129G05.5, HSF01, HSFA6B, LOC4326351, Os01g0571300, OsJ_002223 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HSF | ||||||||
Protein Properties | Length: 403aa MW: 43912 Da PI: 7.4725 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 102.1 | 5e-32 | 94 | 188 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEES..SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws..engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 F+ k+ye++ d++++ ++sw +g sfvv+d++ +a vLp++Fkh nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ LOC_Os01g39020.1 94 FVAKTYEMVADAATDAVVSWGpgGSGASFVVWDPHALAAGVLPRFFKHANFSSFVRQLNTYGFRKVTPDR---------WEFANEAFLAGQKH 177 9********************655679*****************************************99.........************** PP XXXXXXXXXXX CS HSF_DNA-bind 93 llekikrkkse 103 ll++ikr++ + LOC_Os01g39020.1 178 LLKNIKRRRVS 188 *******9865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 2.4E-53 | 90 | 185 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.24E-30 | 90 | 185 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 3.9E-34 | 90 | 185 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.7E-17 | 94 | 117 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 2.7E-28 | 94 | 185 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-17 | 134 | 146 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 135 | 159 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.7E-17 | 147 | 159 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MLKPQTPRAR RAAHPNSHMA SSSSSSSLCR LLIPRPTTRR FSGGGGEGGM AAAAPVKREV 60 KPEAGEGWGG GDLGVVPPPP RPMEGLGEAG PAPFVAKTYE MVADAATDAV VSWGPGGSGA 120 SFVVWDPHAL AAGVLPRFFK HANFSSFVRQ LNTYGFRKVT PDRWEFANEA FLAGQKHLLK 180 NIKRRRVSKP LVDSQLRNKA SVVFGQPEAP GEVVSLKRDR AALRAEVIML KQQYNACKSQ 240 LIAMEEMVRN IERRQQQTIG FFAKVLTNPA FVQQVLLNYV NKNGLRGAAK RQRLMENEEQ 300 HADSPLNKGM EAASVMEADV SPGSTGCGTV GKVETTPMCN FQNIENMCDD VWEELDALPE 360 TGMEQEEKAG IGSFDVEEFV GRPCGWVDDC PYLVEPMQFV EH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 7e-23 | 69 | 185 | 10 | 129 | Heat shock factor protein 1 |
5d5v_B | 7e-23 | 69 | 185 | 10 | 129 | Heat shock factor protein 1 |
5d5v_D | 7e-23 | 69 | 185 | 10 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 178 | 184 | LKNIKRR |
2 | 182 | 186 | KRRRV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.51916 | 0.0 | callus| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32974289 | 0.0 | ||||
Expression Atlas | Q657C0 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g39020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g39020 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK064271 | 0.0 | AK064271.1 Oryza sativa Japonica Group cDNA clone:002-105-E08, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631502.1 | 0.0 | heat stress transcription factor A-6a | ||||
Swissprot | Q657C0 | 0.0 | HFA6B_ORYSJ; Heat stress transcription factor A-6a | ||||
TrEMBL | A0A0E0FNB6 | 0.0 | A0A0E0FNB6_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0MY82 | 0.0 | A0A0E0MY82_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G22600.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0571300-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA01G22600.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP308 | 37 | 231 | Representative plant | OGRP14328 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26150.1 | 8e-72 | heat shock transcription factor A2 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g39020.1 |
Entrez Gene | 4326351 |
Publications ? help Back to Top | |||
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