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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g37100.1 | ||||||||
Common Name | OSJNBa0024F24.43, OSJNBa0066C06.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | Nin-like | ||||||||
Protein Properties | Length: 442aa MW: 47810.2 Da PI: 6.4628 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.3 | 5.4e-27 | 284 | 333 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++i +edl++yF++pi++AA+e++v+lTvLK++CR++G++RWPhRk+ksl LOC_Os01g37100.1 284 DHIGFEDLRRYFYMPITKAAREMNVGLTVLKKRCRELGVARWPHRKMKSL 333 6899********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.496 | 273 | 353 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.7E-21 | 286 | 333 | IPR003035 | RWP-RK domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 442 aa Download sequence Send to blast |
MEMHECCYYG GSIGGDWLNP LAAIPPPCSS SSSSWSSQLL LLSDHDDVLL HSAGDHGGAV 60 AGIGGACMTA DLVVRDEEME MAAGYLPVAA SAAAAADVDH YMYQQFQLEP DQFVSTLPAV 120 AVAVAATAGG GSHDDELLRM PFTDIDLDAF ADARDVVVGV GEPKPSPQHT LDAAIALPAV 180 GGGGAHHFGT QDDDVKFDVT KQRNDAALAG DDSLSMVIVE SYEMGMRRHA AEQEQEQKPK 240 IITSAATTLT PLPLPPPPPP PPRVTRSRRD GSSAATAGGK TRLDHIGFED LRRYFYMPIT 300 KAAREMNVGL TVLKKRCREL GVARWPHRKM KSLKSLILNE MGSKGMSAAA MRRELEALEN 360 CCALMERNPA VELTERTKKL RQACFKENYK RRRAAAVDVL DLDHCFSFAA GHCHRHHHQQ 420 LALPPPPAAA ADHRRRDFFG Y* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q8RYX0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g37100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g37100 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003933 | 0.0 | AP003933.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0066C06. | |||
GenBank | AP004258 | 0.0 | AP004258.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0024F24. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638205.1 | 0.0 | uncharacterized protein LOC107276829 | ||||
TrEMBL | A0A0D3EQ18 | 0.0 | A0A0D3EQ18_9ORYZ; Uncharacterized protein | ||||
TrEMBL | Q8RYX0 | 0.0 | Q8RYX0_ORYSJ; Pentatricopeptide (PPR) repeat-containing protein-like | ||||
STRING | OBART01G19230.1 | 0.0 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12888 | 23 | 30 | Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53040.1 | 4e-31 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g37100.1 |