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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g34060.1 | ||||||||
Common Name | LOC4323963, OJ1005_B10.31, Os01g0524500, OSNPB_010524500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 31912.6 Da PI: 7.8962 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.9 | 2e-12 | 143 | 187 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky LOC_Os01g34060.1 143 PWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKY 187 7*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.6 | 14 | 75 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 4.704 | 18 | 73 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 16.873 | 136 | 192 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.9E-17 | 138 | 193 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-10 | 140 | 190 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 4.3E-17 | 140 | 190 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 6.6E-11 | 141 | 186 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.06E-9 | 143 | 188 | No hit | No description |
Pfam | PF00249 | 7.6E-11 | 143 | 187 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MTSQAATTTT TAAAAAAWTR EDDKAFENAL AACAAPPPAD GGAPDDDWFA ALAASVPGAR 60 SAEEVRRHYE ALVEDVAAID AGRVPLPRYA GEESAAPPDG AGAAAAASKD GGHRRDERKG 120 GGGGYDGGKS CSKAEQERRK GIPWTEEEHR LFLLGLDKFG KGDWRSISRN FVISRTPTQV 180 ASHAQKYFIR LNSMNRDRRR SSIHDITSVT AGDQVAAQQG APITGHQATG NPAAAALGPP 240 GMKHHHHHHP GGAPPPMPMY SAAPMGHPVA GHMVPAAVGT PVVFPPGHAP YVVPVGYPAP 300 PAKMHQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.15338 | 0.0 | leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 24850302 | 0.0 | ||||
Expression Atlas | Q8LH59 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in aboveground tissues, with the highest level in leaves. {ECO:0000269|PubMed:12172034}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepresses strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Functions with GAMYB to integrate diverse nutrient starvation and gibberellin (GA) signaling pathways during germination of grains. Sugar, nitrogen and phosphate starvation signals converge and interconnect with GA to promote the co-nuclear import of MYBS1 and GAMYB, resulting in the expression of a large set of GA-inducible hydrolases, transporters, and regulators that are essential for mobilization of nutrient reserves in the endosperm to support seedling growth (PubMed:22773748). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:22773748}. | |||||
UniProt | Transcription activator that binds to 5'-TATCCA-3' elements in gene promoters. Derepress strongly the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. {ECO:0000250|UniProtKB:Q8LH59}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g34060.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by sucrose and gibberellic acid (GA). {ECO:0000269|PubMed:12172034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g34060 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY151042 | 0.0 | AY151042.1 Oryza sativa (japonica cultivar-group) transcription factor MYBS1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015627636.1 | 0.0 | transcription factor MYBS1 | ||||
Swissprot | B8A9B2 | 0.0 | MYBS1_ORYSI; Transcription factor MYBS1 | ||||
Swissprot | Q8LH59 | 0.0 | MYBS1_ORYSJ; Transcription factor MYBS1 | ||||
TrEMBL | A0A0E0FMH6 | 0.0 | A0A0E0FMH6_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G20310.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9466 | 30 | 41 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 4e-48 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g34060.1 |
Entrez Gene | 4323963 |
Publications ? help Back to Top | |||
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