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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g28050.1 | ||||||||
Common Name | LOC107275546, Os01g0378400, OSNPB_010378400, P0416G11.36 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 266aa MW: 28832.2 Da PI: 8.1439 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 29.8 | 1.7e-09 | 59 | 203 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleev..ikev.diykvePwdLpk....kvkaeek.ewyfFskrdkkyatgkrknra.......tks 80 Gf+ Pt elv ++L+++++g ++ +v i d + P dL + +++ + + e ++F++r++ + + r++ a + LOC_Os01g28050.1 59 TGFQDTPTVGELVLRHLRPRLRGFHCADGDVpvIGVRdDPAAAAPLDLVArhggAADRR-RgEAFYFVRRRRCRRPNVRRTVAeggggggGAG 150 69999*******************9766565424444699********74334322223.258899999988776555554445666665558 PP NAM 81 gyWka..tgkdkevlskkgelvglkktLvfy...kgrapkgektdWvmheyrl 128 g Wk+ tg+ k+v++ + + + k+ fy +g + ++ Wv+ ey++ LOC_Os01g28050.1 151 GLWKKswTGSGKSVTDLGVVVPWSKTCYCFYrrdEGGRLSTFGGGWVLAEYEI 203 99**645899******888888999999***43333444445679******86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.13 | 57 | 230 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-24 | 58 | 229 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.6E-7 | 59 | 203 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence Send to blast |
MAICAAAADH SRASPSSAAT QPTTICWRPS KVKEEVEEDG MVVDPPDDAS EASDNLRATG 60 FQDTPTVGEL VLRHLRPRLR GFHCADGDVP VIGVRDDPAA AAPLDLVARH GGAADRRRGE 120 AFYFVRRRRC RRPNVRRTVA EGGGGGGGAG GLWKKSWTGS GKSVTDLGVV VPWSKTCYCF 180 YRRDEGGRLS TFGGGWVLAE YEITEPGTYR RADEEEDDDD YWVLCHVRKT ASKKRKRNRC 240 DEAVAARAVA GTESKSYLLC GLTAN* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q5ZDF4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g28050.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g28050 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002968 | 0.0 | AP002968.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0416G11. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015637825.1 | 0.0 | uncharacterized protein LOC107275546 | ||||
TrEMBL | Q5ZDF4 | 0.0 | Q5ZDF4_ORYSJ; Os01g0378400 protein | ||||
STRING | OGLUM01G18710.1 | 0.0 | (Oryza glumipatula) | ||||
STRING | ORUFI01G17760.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17372 | 10 | 10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g28050.1 |
Entrez Gene | 107275546 |