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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g24460.1 | ||||||||
Common Name | LOC4326495, Os01g0346900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YC | ||||||||
Protein Properties | Length: 445aa MW: 49180.7 Da PI: 5.0048 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 82.6 | 4.7e-26 | 21 | 122 | 1 | 99 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 q+ fw ++ ie ++df +h +P+ar+kki+ +++ m++ + P++lsk celf+ el+ r+w a++ +r + dia+av++t+ +d LOC_Os01g24460.1 21 QMDEFWRDRqkeIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAARAWACAQSHNRCIILDMDIAEAVASTESYD 113 68899*7655669******************************************************************************** PP NF-YC 91 flvdivprd 99 flvdi ++ LOC_Os01g24460.1 114 FLVDILHNH 122 ****98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00125 | 1.1E-9 | 27 | 106 | IPR007125 | Histone H2A/H2B/H3 |
SuperFamily | SSF47113 | 1.06E-16 | 44 | 120 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 7.0E-20 | 45 | 119 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0007042 | developmental stage | whole plant fruit formation stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MKQTLDVHRS LRPPMPMAQQ QMDEFWRDRQ KEIEMTKDFS EHMIPMARLK KIVSSQKGNM 60 MMTFDMPAFL SKMCELFVQE LAARAWACAQ SHNRCIILDM DIAEAVASTE SYDFLVDILH 120 NHSVKQKSTP CSSTKRCRLV DQPSTSHIPH QHLLPQFAPT YTLAIPITPS LMPLISQCTP 180 SSFPSLPQEK FPLMAPTPIV NRSMLFINNI ARGLGLQGNN INAVANNNIL DNIVGCSSPA 240 VLASMMNPAL LGPSGAPLNP PNSQSYNCTM DIINSNDACG SNNSSVIVAN QANIAPSGHF 300 YPIALQSSCS TFLHSNNNDT ITAILEGVDI SDIMHVTSDV DAATKVFSGQ EEQHEKETNV 360 EWHHQNEIYE SIDIRIINAT TRDGNKCSIS WDELGMADDS LLDNFLEELQ VRKDDVSDTR 420 IAFNKDPFLD DAVLSNPSTS NGNK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 7e-17 | 31 | 119 | 5 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.60852 | 0.0 | flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297596712 | 0.0 | ||||
Expression Atlas | Q0JMZ9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g24460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g24460 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003205 | 0.0 | AP003205.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1146B04. | |||
GenBank | AP003852 | 0.0 | AP003852.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0440D10. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015635714.1 | 0.0 | uncharacterized protein LOC4326495 isoform X1 | ||||
TrEMBL | A0A0E0MVY7 | 0.0 | A0A0E0MVY7_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q0JMZ9 | 0.0 | Q0JMZ9_ORYSJ; Os01g0346900 protein | ||||
STRING | ORUFI01G16200.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9174 | 21 | 45 | Representative plant | OGRP11645 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63470.2 | 3e-24 | nuclear factor Y, subunit C4 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g24460.1 |
Entrez Gene | 4326495 |