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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g23840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 213aa MW: 24121.3 Da PI: 7.8675 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 69.5 | 7.9e-22 | 84 | 172 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 f n+Y+ ++GF+vrk+ +++sk +g+ ++++fvC+keg+r+++k++ +++ra+trtgCk ++ v++++ gk+e+++l+leHn l+ LOC_Os01g23840.1 84 FSNHYGGQIGFDVRKRFENTSKLDGKAISAEFVCNKEGFRTNDKRD-PLIKTPRAVTRTGCKVHMGVTLNRvLGKYEIHDLVLEHNQILQ 172 7799***************************************999.9999********************9**************8775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.2E-17 | 84 | 171 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MEDTNKIRGD LKCDSLSIGR QQGPSHQQSS VPVVTSSRKD GQPQEYSCIQ SPSPVATSNR 60 EHIIPNWVPQ IEMTFSSVVE AQQFSNHYGG QIGFDVRKRF ENTSKLDGKA ISAEFVCNKE 120 GFRTNDKRDP LIKTPRAVTR TGCKVHMGVT LNRVLGKYEI HDLVLEHNQI LQTLETCHLL 180 PSQRRITEVH DYYVQTPFEQ RMNEGFLLSF CI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g23840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g23840 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003331 | 0.0 | AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01. | |||
GenBank | AP003337 | 0.0 | AP003337.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1111_G12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024316957.1 | 5e-49 | uncharacterized protein LOC100833015 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 2e-16 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g23840.1 |