![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g23780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 279aa MW: 28862.6 Da PI: 5.8514 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 24.9 | 2.6e-08 | 6 | 39 | 10 | 43 |
HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifsst 43 t+ k ++ ++ A ELS+LC+++va++ ++ LOC_Os01g23780.1 6 DATYGKMQESLMEEARELSILCGVDVALLCAGGP 39 57999************************99865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 9.503 | 1 | 34 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-7 | 6 | 40 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.1E-7 | 7 | 37 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 279 aa Download sequence Send to blast |
MKMEEDATYG KMQESLMEEA RELSILCGVD VALLCAGGPG TGDGDGGGAV STAEVAVWES 60 EEGVLASYRA ILPRPEAHTL RECLELKLAR ERAKLAMLHQ YGGGGAGAAR VHGRGDGGRD 120 REAGGAALGL LDDGNAVNGD GGGPDLLHIP IQPGAPDSVV VPVISHAQPI ASSTGADFAD 180 APNGFLAMDV GGSLIKSATT QRSARPMGSS SGTPTMANLD QIHYLVGGSA FSIDALESPT 240 LLVRCKTLRI AIQFMLPLRH GRFRANVPSN HRRTETKS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g23780.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g23780 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP003331 | 0.0 | AP003331.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1088D01. | |||
GenBank | AP003337 | 0.0 | AP003337.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1111_G12. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0IT08 | 1e-127 | A0A0E0IT08_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA10G11850.1 | 1e-128 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP23165 | 5 | 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g23780.1 |