PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g21590.1
Common NameB1153F04.11, P0028G04.35
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 548aa    MW: 57857.6 Da    PI: 6.8209
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g21590.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.17.6e-21105225186
          trihelix   1 rWtkqevlaLiearremeerlrrgk..................................lkkplWeevskkmrergferspkqCkekwenlnk 59 
                       +Wt+ +v++Li+++ +++++    +                                  +kk++W++vs++m+e g  +sp+qC++k+++lnk
  LOC_Os01g21590.1 105 KWTDGMVRLLINVVYSVGDDGDGVAaggaaggkasagaaghgkaggsgshgahgqaaaqQKKGKWKSVSRAMMESGHMVSPQQCEDKFNDLNK 197
                       69999999999998855555443222233444455555555556666666666666666********************************** PP

          trihelix  60 rykkikegekkr.tsessstcpyfdqle 86 
                       ryk++ +  +++ +++++++++++d ++
  LOC_Os01g21590.1 198 RYKRVVDLLGRGkACKVVENHALLDAMD 225
                       **********9967************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.4E-17103251No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 548 aa     Download sequence    Send to blast
MGPRGVVGSA AMLGLEMHLA HPQMHAAAYQ QPDPHGGGGG GFQQQVAAVR QQQQQSYSPY  60
SAGASSRVIK APGHDDGMGN GAGKGGVVQQ QQQPGSVGCP WTRMKWTDGM VRLLINVVYS  120
VGDDGDGVAA GGAAGGKASA GAAGHGKAGG SGSHGAHGQA AAQQKKGKWK SVSRAMMESG  180
HMVSPQQCED KFNDLNKRYK RVVDLLGRGK ACKVVENHAL LDAMDELTHK AKDEARKLLS  240
SKHLFFREMC AYHNSGAAAA AAAHGPHGAG AAGVEATACF HHPPPASMAA ASSAARQAAA  300
AAPSLGMKDS SAGPEDDEDD SEDVPSSNEV DDEDDDDDDD DDEVGPGMKS RRIYGGHRVH  360
HHHHHHNGHH KRRRGDDVSS AGAGDDDDED GVKRARGAAS AAGGGDDEGP SAVQQLQSEL  420
AAAVAGGGDP QQVRQWVRRR TVEVEEQQVA HEVRAYHLER QRLKWERFRA NKERDMERAR  480
LRNDRLRIDG RRMLLLLRQK DLDFDIAEAN SSSVDHLTSS APPPLAALQQ QQQPLGSSPS  540
TAGGHPN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.812180.0callus| flower| seed
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ94D75
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g21590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g21590
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034140.0AP003414.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:B1153F04.
GenBankAP0039210.0AP003921.3 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028G04.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880854.10.0sarcoplasmic reticulum histidine-rich calcium-binding protein
TrEMBLA0A0E0MVG50.0A0A0E0MVG5_ORYRU; Uncharacterized protein
TrEMBLQ94D750.0Q94D75_ORYSJ; Uncharacterized protein
STRINGORUFI01G14540.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119443138
Representative plantOGRP1284445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.12e-43sequence-specific DNA binding transcription factors