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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g18584.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 604aa MW: 62069.5 Da PI: 7.6266 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.5 | 1.8e-30 | 316 | 374 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++v+++tYeg+Hnh+ LOC_Os01g18584.1 316 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAiGCPVRKQVQRCAEDKTVLITTYEGNHNHQ 374 7*********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.7E-33 | 300 | 376 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.09E-27 | 308 | 376 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.31 | 310 | 376 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.8E-36 | 315 | 375 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.3E-26 | 317 | 374 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 604 aa Download sequence Send to blast |
MELRPPPPKH HHHRRRRGGG GEDGGEEEEE ETGRLSLRGG GFWRRHDGEE EEEKGGGRRG 60 EIKEVDFFLG ASGRDVVVAS RRHDDGFRGT THGGGGGGDV NIGLDLLTTT TAGAAAGGAA 120 AGAGEEDTGK NHRKEATTAA VDVELRRVVE ENRRLRGMLD ELNRSYSALY HQYLQVTQQQ 180 NHRHPDHHLI MNNNNNRPSL AQTHRTAATT TATTQQFLEP RASSTAQATA DADMAASDDE 240 AGRGGGDGDA SSPSLSNAAG GGGGGNKMRR VGGQDETAAA APARENGEQQ AAAAAELPCR 300 KPRVSVRARS EAPMISDGCQ WRKYGQKMAK GNPCPRAYYR CTMAIGCPVR KQVQRCAEDK 360 TVLITTYEGN HNHQLPPAAT TMANTTSAAA AMLLSGPAAS RDGAAAALLG HHHHHHPAAM 420 FHQSFPYAST MATLSASAPF PTITLDLTQT PAGGAGAASL LHALHRPPVI HPGAAAQAMP 480 FAVPPQLAMY LPQQRAAAAG LGGAGAARQP SVMETVTAAL AADPNFTTAL AAAISSVVAG 540 GAHHQALSTT PRGSAAGAGD GNGNGSSAAA VATGAASPAA TAEAPAASGS PPRLATQSCT 600 TSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-22 | 306 | 376 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-22 | 306 | 376 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.39939 | 0.0 | callus| leaf| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297719842 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g18584.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g18584 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP002480 | 0.0 | AP002480.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0469E05. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025880603.1 | 0.0 | probable WRKY transcription factor 47 isoform X1 | ||||
TrEMBL | A0A0E0FKC7 | 0.0 | A0A0E0FKC7_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA01G14320.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4358 | 32 | 60 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 1e-54 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g18584.1 |