![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g17260.1 | ||||||||
Common Name | LOC4326907, Os01g0279900, OSNPB_010279900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 330aa MW: 36837.4 Da PI: 7.798 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.9 | 2.9e-10 | 43 | 85 | 3 | 45 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 + k rr+++NReAAr+sR+RKka++++Le+ +L++ ++L LOC_Os01g17260.1 43 DQKTLRRLAQNREAARKSRLRKKAYVQQLENSRLKLTQLEQEL 85 56889*************************9877777766555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 1.8E-8 | 35 | 88 | No hit | No description |
SMART | SM00338 | 9.8E-8 | 41 | 104 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.438 | 43 | 87 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 3.0E-7 | 44 | 85 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.78E-7 | 45 | 88 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 48 | 63 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 4.9E-34 | 127 | 202 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 330 aa Download sequence Send to blast |
MADMSPRTDT STDDTDDNHM LEPGQLALAA ASDSDRSKDK HEDQKTLRRL AQNREAARKS 60 RLRKKAYVQQ LENSRLKLTQ LEQELQRARQ QGIFISSSVD QTHSMSGNGA LAFDMEYARW 120 LEEHNRQINE LRSAVNAHAG DNELRGVVDK IMSHYEEIFK QKGNAAKADV FHVLSGMWKT 180 PAERCFLWLG GFRPSELLKL LSTQLEPLTE QQLSGIANLQ QSSQQAEDAL SQGMEALQQS 240 LAETLAGSLG SSGSTGNVAN YMGQMAMAMG KLGTLENFLR QADNLRQQTL QQMQRILTTR 300 QSARALLVIS DYSSRLRALS SLWLARPKE* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.439 | 0.0 | callus| flower| leaf| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 116012108 | 0.0 | ||||
Expression Atlas | Q0JNL3 | - |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g17260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g17260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AB051296 | 0.0 | AB051296.1 Oryza sativa OsNIF3 mRNA for bZIP transcription factor, complete cds. | |||
GenBank | AK242743 | 0.0 | AK242743.1 Oryza sativa Japonica Group cDNA, clone: J090049N20, full insert sequence. | |||
GenBank | HM991168 | 0.0 | HM991168.1 Oryza sativa Japonica Group cultivar Dongjin putative TGA2-like protein 3 mRNA, complete cds. | |||
GenBank | KM096571 | 0.0 | KM096571.1 Oryza sativa Indica Group histone-binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621703.1 | 0.0 | transcription factor TGA2.3 | ||||
Refseq | XP_015621704.1 | 0.0 | transcription factor TGA2.3 | ||||
Refseq | XP_025880532.1 | 0.0 | transcription factor TGA2.3 | ||||
Swissprot | Q0JNL3 | 0.0 | TGA23_ORYSJ; Transcription factor TGA2.3 | ||||
TrEMBL | A0A089VSH3 | 0.0 | A0A089VSH3_ORYSI; Histone-binding protein | ||||
TrEMBL | A0A0E0FK57 | 0.0 | A0A0E0FK57_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0MUP7 | 0.0 | A0A0E0MUP7_ORYRU; Uncharacterized protein | ||||
STRING | OS01T0279900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 | Representative plant | OGRP722 | 16 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12250.5 | 1e-144 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g17260.1 |
Entrez Gene | 4326907 |
Publications ? help Back to Top | |||
---|---|---|---|
|