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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g16810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 339aa MW: 35716.6 Da PI: 7.682 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.2 | 3.4e-17 | 49 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+d+v+q+G+ +W++Ia+++ gR++k+c++rw++ LOC_Os01g16810.1 49 RGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 94 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.5 | 3e-18 | 101 | 145 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T+eE+e+l a++ +G++ W++Iar ++ gRt++ +k++w+ + LOC_Os01g16810.1 101 RRAFTEEEEERLMAAHRAYGNK-WALIARLFP-GRTDNAVKNHWHVL 145 678*******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.126 | 44 | 95 | IPR017930 | Myb domain |
SMART | SM00717 | 4.7E-14 | 48 | 97 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.12E-28 | 49 | 142 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-16 | 49 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.1E-27 | 50 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.70E-13 | 52 | 93 | No hit | No description |
PROSITE profile | PS51294 | 27.28 | 96 | 150 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 100 | 148 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-15 | 101 | 145 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.3E-21 | 103 | 148 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.28E-12 | 103 | 146 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MAHEMMGGFF GHPPPPPATA AVGEEEDEVV EETEEGGHGG GVQGKLCARG HWRPAEDAKL 60 KDLVAQYGPQ NWNLIAEKLD GRSGKSCRLR WFNQLDPRIN RRAFTEEEEE RLMAAHRAYG 120 NKWALIARLF PGRTDNAVKN HWHVLMARRH REQSGAFRRR KPSSSSASPA PAPAPPPPPQ 180 PVVALHHHHH RYSQQYSGYS GAAESDESAS TCTTDLSLSS GSAAAAAAAA AAANIPCCFY 240 QSTPRASSSS TAACRAPRVA AAADTVAFFP GAGYDFAAAP HAMAPAAAST FAPSARSAFS 300 APAGRGEPPG AVDQRGGAQA TTDSHTIPFF DFLGVGAT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-34 | 49 | 149 | 7 | 107 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.100758 | 0.0 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992670 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, expressed in anther vacuolar tissue from stage 9 to stage 13. {ECO:0000269|PubMed:20305120}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root vascular tissue, primordia of lateral roots, leaf collar, and veins of lemma, palea and pistil. {ECO:0000269|PubMed:20305120}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for sugar partitioning from leaves to anthers during male reproductive development. Required for the production of functional pollen grains. Binds to the promoter of the anther-specific sugar transporter MST8 and regulates its expression. Regulates the expression of genes involved in sugar partitioning in flower, such as the sugar transporter SUT3, the invertase INV4, the UDP-glucose pyrophosphorylase UGP2 and the starch synthase WAXY. {ECO:0000269|PubMed:20305120}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00222 | DAP | Transfer from AT1G69560 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g16810.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding. {ECO:0000269|PubMed:20305120}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g16810 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP000836 | 0.0 | AP000836.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0038F12. | |||
GenBank | AP000837 | 0.0 | AP000837.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0424A08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015631112.1 | 0.0 | transcription factor CSA-like | ||||
Swissprot | Q5NBM8 | 0.0 | CSA_ORYSJ; Transcription factor CSA | ||||
TrEMBL | A0A0E0MUK3 | 0.0 | A0A0E0MUK3_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI01G12050.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP294 | 38 | 260 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-71 | myb domain protein 105 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g16810.1 |