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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g14720.1 | ||||||||
Common Name | LOC4327221, Os01g0249900, OSNPB_010249900, P0434D08.6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GeBP | ||||||||
Protein Properties | Length: 313aa MW: 33403.9 Da PI: 7.6677 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 60.1 | 6e-19 | 13 | 97 | 20 | 96 |
DUF573 20 idfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqkifelskkiW 96 +df+a++g+ +++ d+ fy+ +++++sf+++ksqlveK+rrLKkK++ + ++ + ++f+++h+ i++l++ iW LOC_Os01g14720.1 13 LDFTARRGTtfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRLCAARmasspHAAAAGFAFRTPHEGAIYDLARHIW 97 79******98877778***********************************99996666556677889***************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 2.1E-18 | 12 | 97 | IPR007592 | Protein of unknown function DUF573 |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 313 aa Download sequence Send to blast |
MPCGYGVPII STLDFTARRG TTFASHQYDT GPFYDEIRRR LSFDFTKSQL VEKLRRLKKK 60 YRLCAARMAS SPHAAAAGFA FRTPHEGAIY DLARHIWPPA LKRDGTASDD DDINPAAAAA 120 TAAVMTPVAM EDGFGGSAPT PTPTPRGRGG RRVRRRMAQE QEAAALPSAP ALTSTDGAHQ 180 EPLVAAMENT LPQIAQLPPV SETEPMPVIA NGANEEAVRS VLSRLLKEFI TSFAVVGQTG 240 PGMGLNMGFG GAGLNADIAG LGFGIAGLNP GVPGADRWRQ HQILELEVYL KRIELVREQV 300 TAALDELRSS EG* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.34089 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32982909 | 0.0 | ||||
Expression Atlas | Q5NBE6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g14720.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g14720 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK072886 | 0.0 | AK072886.1 Oryza sativa Japonica Group cDNA clone:J023149P13, full insert sequence. | |||
GenBank | AP001278 | 0.0 | AP001278.1 Oryza sativa Japonica Group genomic DNA, chromosome 1, clone:P0434D08. | |||
GenBank | AP014957 | 0.0 | AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644705.2 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | Q5NBE6 | 0.0 | Q5NBE6_ORYSJ; Os01g0249900 protein | ||||
STRING | OS01T0249900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 | Representative plant | OGRP3184 | 10 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.1 | 4e-10 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g14720.1 |
Entrez Gene | 4327221 |