PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os01g13740.2
Common NameOsJ_01047
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family G2-like
Protein Properties Length: 387aa    MW: 40145.3 Da    PI: 4.9535
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os01g13740.2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like77.61.6e-24215267154
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYR 54 
                       k +++WtpeLH+rFv+aveqL G++kA+P++ilelm++++Lt+++++SHLQ  R
  LOC_Os01g13740.2 215 KVKVDWTPELHRRFVQAVEQL-GIDKAVPSRILELMGIECLTRHNIASHLQAAR 267
                       5689*****************.*****************************866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.386212271IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-22213267IPR009057Homeodomain-like
SuperFamilySSF466894.84E-15213268IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23215267IPR006447Myb domain, plants
PfamPF002496.0E-6218264IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MLEVSTLRSP KADQRAGVGG HHVVGFVPAP PSPADVADEV DAFIVDDSCL LEYIDFSCCD  60
VPFFHADDGD ILPDLEVDPT ELLAEFASSP DDEPPPTTSA PGPGEPAAAA GAKEDVKEDG  120
AAAAAAAAAA DYDGSPPPPR GKKKKDDEER SSSLPEEKDA KNGGGDEVLS AVTTEDSSAG  180
AAKSCSPSAE GHSKRKPSSS SSSAAAGKNS HGKRKVKVDW TPELHRRFVQ AVEQLGIDKA  240
VPSRILELMG IECLTRHNIA SHLQAARKWG PQAVTPGTPC MPPPLPPAAM LQRFPVPPVP  300
GMVPHPMYRP IPPPSPPQGN KLAALQLQLD AHPSKESIDA AIGDVLVKPW LPLPLGLKPP  360
SLDSVMSELH KQGIPKVPPA ASGAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145RGKKKKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.12290.0flower| leaf| panicle| seed| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379906420.0
Expression AtlasA2ZR50-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:11340194}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os01g13740.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs01g13740
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1210190.0AK121019.1 Oryza sativa Japonica Group cDNA clone:J023049D13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615905.11e-151probable transcription factor GLK2 isoform X1
SwissprotQ5NAN51e-152GLK2_ORYSJ; Probable transcription factor GLK2
TrEMBLA2ZR500.0A2ZR50_ORYSJ; Uncharacterized protein
STRINGORGLA01G0079000.10.0(Oryza glaberrima)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-29GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]