![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g12860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 973aa MW: 106569 Da PI: 4.8312 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 37.9 | 4e-12 | 39 | 76 | 10 | 48 |
HHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 10 ellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l LOC_Os01g12860.1 39 AILSRAVQTYNGKNWKKIAECFP-DRTDVQCLHRWQKVL 76 57899******************.************986 PP | |||||||
2 | Myb_DNA-binding | 62.4 | 9.4e-20 | 82 | 128 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l LOC_Os01g12860.1 82 KGPWSKEEDEIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWYNHL 128 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 48.5 | 1.9e-15 | 134 | 176 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++++k++w+ LOC_Os01g12860.1 134 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNSIKNHWN 176 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.51E-9 | 38 | 76 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 38 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.561 | 38 | 76 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.5E-5 | 38 | 78 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.88E-11 | 38 | 86 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.8E-10 | 39 | 76 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 31.183 | 77 | 132 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-31 | 79 | 175 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-18 | 81 | 130 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 82 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.84E-16 | 84 | 128 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-25 | 94 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.815 | 133 | 183 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-14 | 133 | 181 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.3E-14 | 134 | 177 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.03E-11 | 136 | 176 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 136 | 183 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0032875 | Biological Process | regulation of DNA endoreduplication | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 973 aa Download sequence Send to blast |
MESLLDLRRL LKKEKSAMNQ KGDDLSMGKR LKALLTIDAI LSRAVQTYNG KNWKKIAECF 60 PDRTDVQCLH RWQKVLNPEL VKGPWSKEED EIIVQMVNKL GPKKWSTIAQ ALPGRIGKQC 120 RERWYNHLNP GINKEAWTQE EEITLIHAHR MYGNKWAELT KFLPGRTDNS IKNHWNSSVK 180 KKVNSYMSSG LLTQVSCLPL NEYSANCNSS PAMTQQNSED SGCFAVREVE NSSGCSQSSL 240 AKVSCSQVHD TTVPLGCDLQ VNANFDKNEA HDSQSSMGPQ ACYTSAEAVA SALPAVHCHV 300 SSSNLDPDQH LQEDFAQGLN LDMTIDEMPT VPSFADNQTV CSIENHERSL EPYDVAMEVP 360 LSMLSSDSGA EQKLHFMSEA DFNSPNCLKS ELWQDISLQG LLSGPDAVEA DSISRSNHQS 420 DVYSSEADTH FLAPPYMPQT SNSSSVMGLA DDQSPQMSVP PSLICSNAMT DDAPFDNRPG 480 RKEMPLSQAE VVTQSSSSSG DAEMFANPGC SNDRHVPSST MESIPECGDQ QVTNAEEPEA 540 SLEKEPSLTQ SVTAPDEQDK GALFYEPPRF PSLDVPFVSC DLVTSGDLQE FSPLGIRQLM 600 HSTMNVCTPM RLWGSPTHDE STGVLLKSAA KSFICTPSIL KKRHRDLLSP IPDKRIEKKY 660 GTEKDRGVSD TSSTGIQTSC INATKDDALI TTVLRIERSA SSKSLEKKLV FSDENKENLG 720 YTTEQTKDGQ SAGNDEHMDE QTTGERSSAT NVATNDDLSG NLQPAGILIE HSGDDPISPD 780 YGKNTMNQKL NTNVKSLSVC KEGVCAKSKP TELIVEKSSP CINVDYEYVN ILADTPGIKR 840 GLESPSAWKS PWFVDMHFQG SYFTSPADSY DALGLMKQIN VQTAAALVEA REVLASGGQC 900 DNISSDKENT GNPDAKKEPG TTKLQTKIMA EGRVLDFECT TPERSSDKNA GSNLGRYLSS 960 PIPSSHLLKS FR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 2e-62 | 38 | 183 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-62 | 38 | 183 | 14 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.22373 | 0.0 | callus| flower| panicle| root |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00505 | DAP | Transfer from AT5G11510 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g12860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g12860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK318601 | 0.0 | AK318601.1 Oryza sativa Japonica Group cDNA, clone: J100066E24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015625869.1 | 0.0 | transcription factor MYB3R-1 | ||||
TrEMBL | I1NLJ2 | 0.0 | I1NLJ2_ORYGL; Uncharacterized protein | ||||
STRING | ORGLA01G0073200.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-122 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g12860.1 |