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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g09850.2 | ||||||||
Common Name | LOC4327319, Os01g0195000, OsJ_00729, OSNPB_010195000, P0001B06.25, P0498B01.11 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | C2H2 | ||||||||
Protein Properties | Length: 488aa MW: 51815.9 Da PI: 8.6098 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.4 | 2.8e-06 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++Cgk F r nL+ H r H LOC_Os01g09850.2 74 YVCEICGKGFQRDQNLQLHRRGH 96 9********************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.1E-8 | 73 | 96 | No hit | No description |
PROSITE profile | PS50157 | 11.801 | 74 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0069 | 74 | 96 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.3E-6 | 74 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 44 | 116 | 146 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.5E-4 | 139 | 171 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.1E-8 | 146 | 171 | No hit | No description |
SMART | SM00355 | 150 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage | ||||
PO:0007606 | developmental stage | gynoecium development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MMLKDLAEIQ QQQLLAAAEE NMSNLTSASG DQASVSSHPA PPPAKKKRSL PGNPDPEAEV 60 IALSPRTLMA TNRYVCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRNPKEV VRKKVYVCPE 120 AGCVHHDPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKRY AVHSDWKAHS KVCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAEESARAV TAAAAVAGQQ QHGGGMLFSQ VADVLDHQAA 240 MAMGGHGLMQ ELCLKREQQQ QQQQFAPSWL TAQQQQQQLE AMAGAGNPAA MYGSARLDQE 300 FIGSSTPESG GAQQAGLSFG FSSTSSAPPH PAASSAHMSA TALLQKAAQM GATLSRPSSH 360 AHMAAAAAAS THNSSSSAAT TNAPPPPPTS NVSSTCVGAG GYGLAFEASH FIAADESSRG 420 ARSDRDTGNG VAGAGNDGLT RDFLGLRAFS HGNIMSMAGF DPCMSTTSAS SAAPYDHHHH 480 SNKPWHS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 7e-34 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 7e-34 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 100 | 113 | KLKQRNPKEVVRKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.4648 | 0.0 | flower| leaf| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115435059 | 0.0 | ||||
Expression Atlas | Q5SMY2 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g09850.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g09850 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK105663 | 0.0 | AK105663.1 Oryza sativa Japonica Group cDNA clone:001-200-H06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622491.1 | 0.0 | protein indeterminate-domain 7 | ||||
TrEMBL | Q5SMY2 | 0.0 | Q5SMY2_ORYSJ; Os01g0195000 protein | ||||
STRING | OS01T0195000-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-105 | indeterminate(ID)-domain 7 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g09850.2 |
Entrez Gene | 4327319 |