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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g09590.1 | ||||||||
Common Name | LOC4327303, Os01g0191900, OsJ_00708, OSNPB_010191900, P0671B11.5, P0710E05.40 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 265aa MW: 27979.3 Da PI: 6.0167 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.9 | 7.1e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd+ l d+++++G+ +W + +++ g++R++k+c++rw++yl LOC_Os01g09590.1 14 RGPWSPEEDDALRDYINRHGTAgNWISLPNKAGLRRCGKSCRLRWLNYL 62 89******************99*************************97 PP | |||||||
2 | Myb_DNA-binding | 45.3 | 2e-14 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++T eEd ++ + +lG++ W+tIa+ + +Rt++++k++w++ LOC_Os01g09590.1 69 GAFTDEEDAIITSLYSKLGSK-WSTIAAQLE-RRTDNDVKNHWNT 111 89*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.286 | 9 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.68E-26 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.3E-11 | 13 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 14 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-23 | 15 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.78E-9 | 16 | 62 | No hit | No description |
PROSITE profile | PS51294 | 23.3 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-12 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-12 | 69 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-23 | 70 | 117 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.59E-9 | 70 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 265 aa Download sequence Send to blast |
MGRTPCCDRE AVKRGPWSPE EDDALRDYIN RHGTAGNWIS LPNKAGLRRC GKSCRLRWLN 60 YLRPDIRHGA FTDEEDAIIT SLYSKLGSKW STIAAQLERR TDNDVKNHWN TKLKRRLAAA 120 AACTPLLPLP APPPLAATHT SPSSSLLLLP PLAVPTVKTE AYTCDDFLQQ LLPTATAATA 180 LRDPFADGAA TDGGSTSASA ASSGSNWSAD TGVVVVGGGG GGGLFPEFCM SSDDLAGAAT 240 AEDDHFIGGG YYYPLDPSLS SSLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 3e-23 | 14 | 117 | 7 | 108 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.10204 | 0.0 | callus| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994334 | 0.0 | ||||
Expression Atlas | Q9LG70 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g09590.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g09590 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109125 | 0.0 | AK109125.1 Oryza sativa Japonica Group cDNA clone:002-155-D04, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015628419.1 | 0.0 | transcription factor RAX2 | ||||
Refseq | XP_015628427.1 | 0.0 | transcription factor RAX2 | ||||
TrEMBL | Q9LG70 | 0.0 | Q9LG70_ORYSJ; Os01g0191900 protein | ||||
STRING | OS01T0191900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP135 | 38 | 412 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36890.1 | 8e-63 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g09590.1 |
Entrez Gene | 4327303 |