![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os01g09550.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 31618 Da PI: 7.1582 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 31.2 | 6.3e-10 | 4 | 37 | 97 | 128 |
NAM 97 gelvglkktLvfy..kgrapkgektdWvmheyrl 128 g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l LOC_Os01g09550.3 4 GRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 37 6889*********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 17.616 | 1 | 56 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.8E-13 | 3 | 56 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 286 aa Download sequence Send to blast |
MVSGRQKGCK KILVLYTNFG KHRKPEKTNW VMHQYHLGDL EEEKEGELVV CKIFYQTQPR 60 QCSWSSDRGG GAAATASAVT TAAVQQDQQR RRDSGSGSCS STRDHEVSAT SYSTAGYAVA 120 AAVEMQHLKH AADHFSFAPF RKSFEEVGIS GDQVHSNQLG RSEQQHAGQE QQPHRPLLAT 180 TTAVPATAFL ISRPTNPVSN IVPPAMQHAS VVLDHDQFHV PAILLHHDKF QQQQQKLDRR 240 SAGLEELIMG CTSSSTKGEA SIPHSQETEW PYQPYWTPDN QDHHG* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.27469 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 37990962 | 0.0 | ||||
Expression Atlas | B7E6R6 | - |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os01g09550.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os01g09550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK061716 | 0.0 | AK061716.1 Oryza sativa Japonica Group cDNA clone:001-037-H07, full insert sequence. | |||
GenBank | AK066231 | 0.0 | AK066231.1 Oryza sativa Japonica Group cDNA clone:J013059M09, full insert sequence. | |||
GenBank | AK106152 | 0.0 | AK106152.1 Oryza sativa Japonica Group cDNA clone:001-207-H11, full insert sequence. | |||
GenBank | EU541472 | 0.0 | EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615071.1 | 0.0 | NAC domain-containing protein 75 isoform X6 | ||||
Swissprot | Q9M0F8 | 1e-62 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | B7E6R6 | 0.0 | B7E6R6_ORYSJ; cDNA clone:001-037-H07, full insert sequence | ||||
STRING | ORGLA01G0055000.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G29230.1 | 3e-27 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os01g09550.3 |
Publications ? help Back to Top | |||
---|---|---|---|
|