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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g09550.1 | ||||||||
Common Name | LOC4327298, NAC075 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 487aa MW: 54335 Da PI: 7.9771 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.1 | 2.9e-35 | 96 | 238 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........ 77 lp+G++F+Ptd+el+ e+L++kv+++ ++++ i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ LOC_Os01g09550.1 96 LPAGVKFDPTDQELI-EHLEAKVREEGsrshplIDEFIPtIEGEdGICYTHPEKLP-GVTRDGLSKHFFHRPSKAYTTGTRKRRKiqtecdvq 186 799************.99******9996775553333333666646**********.555666799******************756666644 PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l LOC_Os01g09550.1 187 KGETRWHKTGKTRPVMV-SGRQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 238 33778************.9999**********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.81E-39 | 91 | 257 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 34.27 | 96 | 257 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-16 | 97 | 238 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 487 aa Download sequence Send to blast |
MYTSPTLLAL SFALLLLILL LYYSSSLLYS QLATRRRLTH ACARSLPDAY ESGMNRGHIS 60 SSELIDAKLE ERRISTAKHC PSCGNKLDCK PDWVGLPAGV KFDPTDQELI EHLEAKVREE 120 GSRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSKH FFHRPSKAYT TGTRKRRKIQ 180 TECDVQKGET RWHKTGKTRP VMVSGRQKGC KKILVLYTNF GKHRKPEKTN WVMHQYHLGD 240 LEEEKEGELV VCKIFYQTQP RQCSWSSDRG GGAAATASAV TTAAVQQDQQ RRRDSGSGSC 300 SSTRDHEVSA TSYSTAGYAV AAAVEMQHLK HAADHFSFAP FRKSFEEVGI SGDQVHSNQL 360 GRSEQQHAGQ EQQPHRPLLA TTTAVPATAF LISRPTNPVS NIVPPAMQHA SVVLDHDQFH 420 VPAILLHHDK FQQQQQKLDR RSAGLEELIM GCTSSSTKGE ASIPHSQETE WPYQPYWTPD 480 NQDHHG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 5e-12 | 94 | 238 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.27469 | 0.0 | callus| flower| leaf| panicle| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37990962 | 0.0 | ||||
Expression Atlas | B2CPX4 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g09550.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g09550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU541472 | 0.0 | EU541472.1 Oryza sativa Japonica Group cultivar Dongjin NAC-type transcription factor (NAC075) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615071.1 | 0.0 | NAC domain-containing protein 75 isoform X6 | ||||
Swissprot | Q9M0F8 | 1e-154 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | B2CPX4 | 0.0 | B2CPX4_ORYSJ; NAC-type transcription factor | ||||
STRING | ORGLA01G0055000.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-116 | NAC domain containing protein 75 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g09550.1 |
Entrez Gene | 4327298 |
Publications ? help Back to Top | |||
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