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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g06550.1 | ||||||||
Common Name | LOC4324058, Os01g0158900, OSNPB_010158900, P0041E11.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-X1 | ||||||||
Protein Properties | Length: 910aa MW: 99555.6 Da PI: 8.4579 | ||||||||
Description | NF-X1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-NF-X1 | 20.2 | 1.3e-06 | 262 | 279 | 1 | 18 |
zf-NF-X1 1 CGkHkCqklCHeGpCppC 18 CG+H+C CH GpCppC LOC_Os01g06550.1 262 CGIHRCPVDCHDGPCPPC 279 ****************** PP | |||||||
2 | zf-NF-X1 | 16.5 | 1.8e-05 | 369 | 388 | 1 | 19 |
zf-NF-X1 1 CGkHkCqklCHeGpCpp.Cp 19 CG+HkC + CH+G C + C+ LOC_Os01g06550.1 369 CGRHKCPERCHRGSCVEtCR 388 ***************99997 PP | |||||||
3 | zf-NF-X1 | 16.5 | 1.9e-05 | 422 | 441 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+H C + C+eG+C pCp+ LOC_Os01g06550.1 422 CGRHACRRRCCEGDCAPCPE 441 ******************96 PP | |||||||
4 | zf-NF-X1 | 22.3 | 2.9e-07 | 449 | 468 | 1 | 20 |
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC ++CH+G C pCp+ LOC_Os01g06550.1 449 CGNHKCLSPCHRGACAPCPL 468 ******************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57850 | 4.24E-6 | 108 | 166 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 109 | 159 | IPR019786 | Zinc finger, PHD-type, conserved site |
PROSITE profile | PS50089 | 9.096 | 109 | 160 | IPR001841 | Zinc finger, RING-type |
SMART | SM00438 | 0.02 | 209 | 227 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.038 | 210 | 226 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 8.41E-9 | 252 | 300 | No hit | No description |
Pfam | PF01422 | 5.8E-5 | 262 | 279 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0011 | 262 | 281 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 3.18E-7 | 305 | 345 | No hit | No description |
Pfam | PF01422 | 0.41 | 315 | 333 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.082 | 315 | 334 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 5.96E-9 | 359 | 408 | No hit | No description |
Pfam | PF01422 | 0.0033 | 369 | 388 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.035 | 369 | 389 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 4.27E-9 | 412 | 460 | No hit | No description |
Pfam | PF01422 | 0.0041 | 422 | 440 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.087 | 422 | 441 | IPR000967 | Zinc finger, NF-X1-type |
CDD | cd06008 | 1.64E-10 | 439 | 487 | No hit | No description |
Pfam | PF01422 | 4.8E-5 | 449 | 467 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.0038 | 449 | 468 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 25 | 512 | 527 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 36 | 516 | 526 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 89 | 535 | 544 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 160 | 535 | 580 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 0.36 | 617 | 627 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 200 | 617 | 661 | IPR000967 | Zinc finger, NF-X1-type |
Pfam | PF01422 | 12 | 671 | 688 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.1 | 671 | 689 | IPR000967 | Zinc finger, NF-X1-type |
SMART | SM00438 | 0.44 | 734 | 755 | IPR000967 | Zinc finger, NF-X1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010310 | Biological Process | regulation of hydrogen peroxide metabolic process | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000037 | Biological Process | regulation of stomatal complex patterning | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0001078 | Molecular Function | transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009066 | anatomy | anther | ||||
PO:0001004 | developmental stage | anther development stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 910 aa Download sequence Send to blast |
MPFSYAAAAS GSASSSRKPV PVAAAAARRP APSPAAAAAP APSPSNPSAV SDSDPSSYSS 60 SGEETDLTAS DPAAASVISS YLSVAGDGAD LSKVGIFLSS AARRRSPPCL ICFDPIRPSD 120 PVWSCSASCF ALLHLHCIQS WAHQSSSAAP SPTWGCPKCR FPYPKSQTPT SYLCFCSKTV 180 DPAPDPWILP HSCGDVCGRR LNADRDSGCE HNCLLLCHPG PCPPCPAIVP NAMCFCGSHR 240 ETRRCSHQRY SCSGKCNKRL GCGIHRCPVD CHDGPCPPCA VRGKHKCECG ETMEERLCSE 300 RVFQCKRECG GMLQCGKHSC ERGCHAGKCG GCPLQGRRTC PCGKKDYPSL DCDAEAATCG 360 STCEKVLGCG RHKCPERCHR GSCVETCRLV ITKSCRCGGL KKEVPCYQEL TCERKCQRLR 420 NCGRHACRRR CCEGDCAPCP EVCDKRLRCG NHKCLSPCHR GACAPCPLMK TISCNCGQTF 480 FEVPCGTEKN QKPPKCSKKC NIARLCRHKL ECRPHKCHYG ACPPCKLICG EELSCGHRCK 540 LRCHGPIAPP NPEFTLKPIK RKKGKHIDST PGTPCPPCQE VVLVPCFGHH LGQERAILCS 600 KRRQFPCQNL CGNPLNCGNH YCTKACHVLQ IPLSQPEGDQ SAILSLASAS AFAEPCEECN 660 LPCQRVREPP CSHPCPLPCH LNDCPPCKAL VKRPCHCGAM VHAFECMYYN NLNATKQQKV 720 RSCGGPCHRK LPNCPHLCSE ICHPGQCPSV DQCMKKVNVR CACNNLKKEW ICQDVLKEYR 780 QSGRDPKQIP KNQYAVGLLA CGEDCVKKVK AADSELHLRK IQEIKTPAVE VENVPKRRKR 840 RNRGQESVES SKFQEIKAVA LKFLLVIFLC IIVVAGLYLL WKGVYRLSDW MNDMEEQRAR 900 QRHLKPGRL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 834 | 840 | PKRRKRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.12454 | 0.0 | callus| flower| panicle| seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976783 | 0.0 | ||||
Expression Atlas | Q5ZEL8 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Constitutively expressed in mesophyll and guard cells. {ECO:0000269|PubMed:22073231}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:21429190, ECO:0000269|PubMed:22073231, ECO:0000269|PubMed:22516817}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g06550.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269|PubMed:21300918, ECO:0000269|PubMed:22073231}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g06550 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066765 | 0.0 | AK066765.1 Oryza sativa Japonica Group cDNA clone:J013082G02, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621682.1 | 0.0 | NF-X1-type zinc finger protein NFXL2 | ||||
Swissprot | Q9FFK8 | 0.0 | NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2 | ||||
TrEMBL | A0A0E0MRL8 | 0.0 | A0A0E0MRL8_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q5ZEL8 | 0.0 | Q5ZEL8_ORYSJ; Os01g0158900 protein | ||||
STRING | ORUFI01G03990.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS01T0158900-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10773 | 35 | 37 | Representative plant | OGRP6325 | 17 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05660.1 | 0.0 | sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g06550.1 |
Entrez Gene | 4324058 |