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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os01g04930.1 | ||||||||
Common Name | LOC4325454, Os01g0142500, OsJ_00326, OSNPB_010142500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 295aa MW: 32501.6 Da PI: 9.796 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.1 | 1.1e-09 | 28 | 73 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47 +W++eE +++ +a + l + +W+++ar ++ gR++ ++ ++++++ LOC_Os01g04930.1 28 KWSPEENKQFERALAGLDLRcpDWDRVARAIP-GRSALEVMNHFRDL 73 8*****************99************.***********976 PP | |||||||
2 | Myb_DNA-binding | 48.1 | 2.6e-15 | 141 | 185 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky LOC_Os01g04930.1 141 PWTEEEHKLFLLGLKKYGKGDWRNISRNFVQTRTPTQVASHAQKY 185 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.5E-5 | 25 | 76 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-5 | 27 | 72 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.284 | 28 | 74 | IPR017877 | Myb-like domain |
CDD | cd00167 | 1.13E-7 | 28 | 73 | No hit | No description |
SuperFamily | SSF46689 | 2.99E-8 | 28 | 81 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-8 | 28 | 73 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.359 | 134 | 190 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.8E-18 | 135 | 190 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.7E-17 | 137 | 188 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 2.3E-12 | 138 | 184 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.4E-13 | 138 | 188 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.66E-12 | 141 | 186 | No hit | No description |
Pfam | PF00249 | 9.9E-13 | 141 | 185 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MMMRDVCMEV LPPMDHYASR GNWFMARKWS PEENKQFERA LAGLDLRCPD WDRVARAIPG 60 RSALEVMNHF RDLELDVQQI ENGMVPFPVY GAAAAGGAFT LQWDGAHGVG DFRNAYRFGG 120 GGGGKRHFGR TPEQERKKGV PWTEEEHKLF LLGLKKYGKG DWRNISRNFV QTRTPTQVAS 180 HAQKYFIRLN SGGKDKRRSS IHDITTVNLT DDRPPSPSQS SLISNQSNTS TLTAAVAPFS 240 STADVKPQNA ANASFNSPSR TLGMAGYGMG LQDQGLQCGG PLHDQLAASR SILF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-13 | 18 | 90 | 3 | 73 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.1619 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32977982 | 0.0 | ||||
Expression Atlas | Q0JQS2 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os01g04930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os01g04930 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067964 | 0.0 | AK067964.1 Oryza sativa Japonica Group cDNA clone:J013124L02, full insert sequence. | |||
GenBank | EU837250 | 0.0 | EU837250.1 Oryza sativa Japonica Group clone KCB707G04 myb transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015621817.1 | 0.0 | transcription factor DIVARICATA | ||||
Swissprot | Q8S9H7 | 2e-82 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | Q0JQS2 | 0.0 | Q0JQS2_ORYSJ; Myb transcription factor | ||||
STRING | OS01T0142500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7886 | 33 | 48 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38090.1 | 2e-64 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os01g04930.1 |
Entrez Gene | 4325454 |
Publications ? help Back to Top | |||
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