PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA036149-PA
Common NameOsI_38424
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family M-type_MADS
Protein Properties Length: 92aa    MW: 10324 Da    PI: 10.4632
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA036149-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.42.5e-251059251
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      rien+  rqvtfskRr g+lKKA+E+ vLCd++va i+fs +g+l+ y+s
  BGIOSGA036149-PA 10 RIENEVSRQVTFSKRRPGLLKKAHEIAVLCDVDVAAIVFSAKGNLFHYAS 59
                      8**********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-34160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.072161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.85E-27262IPR002100Transcription factor, MADS-box
CDDcd002656.40E-36275No hitNo description
PRINTSPR004042.6E-27323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.6E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MGRGKVQVRR IENEVSRQVT FSKRRPGLLK KAHEIAVLCD VDVAAIVFSA KGNLFHYASS  60
HTTITRWCHF SAPLLLPMGE YNVNHSGIFV SQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21187178MEF2C
5f28_B5e-21187178MEF2C
5f28_C5e-21187178MEF2C
5f28_D5e-21187178MEF2C
6byy_A5e-21173175MEF2 CHIMERA
6byy_B5e-21173175MEF2 CHIMERA
6byy_C5e-21173175MEF2 CHIMERA
6byy_D5e-21173175MEF2 CHIMERA
6bz1_A5e-21173175MEF2 CHIMERA
6bz1_B5e-21173175MEF2 CHIMERA
6bz1_C5e-21173175MEF2 CHIMERA
6bz1_D5e-21173175MEF2 CHIMERA
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO298257271e-103
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing seeds and seedling shoots. {ECO:0000269|PubMed:14701936}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2500751e-100AY250075.1 Oryza sativa (japonica cultivar-group) MADS20 (MADS20) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619865.29e-39MADS-box transcription factor 20
SwissprotQ2QQA39e-40MAD20_ORYSJ; MADS-box transcription factor 20
TrEMBLA2ZKT19e-63A2ZKT1_ORYSI; Uncharacterized protein
STRINGOMERI12G08810.18e-39(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.13e-28MIKC_MADS family protein