PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA019342-PA
Common NameOsI_18832
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family DBB
Protein Properties Length: 342aa    MW: 35648.4 Da    PI: 5.0128
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA019342-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.54.2e-06442537
          zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                       C+ +e  e++  C  ++  lC+ C   +H        H
  BGIOSGA019342-PA  4 LCSACEAAEASVLCCADEAALCARCDRDIHAAnrlagkH 42
                      7******99*********************544555555 PP
2zf-B_box31.24.4e-1068108337
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                       ++kC+ ++e ++ +fC +++ llC++C ++ H        H
  BGIOSGA019342-PA  68 PPKCDICQESHAYFFCLEDRALLCRSCDVAVHTAnafvsaH 108
                       789******99*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.6E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.111147IPR000315B-box-type zinc finger
CDDcd000217.85E-5435No hitNo description
SuperFamilySSF578455.95E-563106No hitNo description
SMARTSM003361.4E-1566113IPR000315B-box-type zinc finger
PfamPF006431.2E-868100IPR000315B-box-type zinc finger
CDDcd000215.82E-970113No hitNo description
PROSITE profilePS501199.54271113IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MKLLCSACEA AEASVLCCAD EAALCARCDR DIHAANRLAG KHLRLPLLSP ASSSSSSTAA  60
LAPPPPSPPK CDICQESHAY FFCLEDRALL CRSCDVAVHT ANAFVSAHRR FLLTGVQVGQ  120
EQDEHSPDPP EPSPPPPPPP PASKSDHPAP LYGEGGGGFS WDAADSPAAG GLPDWSAVVD  180
QFGSPPPPRH TDTATVTTPP PTKRSPRAPA FGGQGGMMDW PLGEFFGGFT DFTGGFGFGF  240
GDSGTSKADS GKLGGSTDGS PYYRSSSEDD RNADELFGQV PEIQWSVPEL PSPPTASGLH  300
WQRHPAATHG GGGGGPDTTA FVPDICSPDS CFPATTSKRR RQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.278170.0flower| leaf| panicle| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154625820.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1068650.0AK106865.1 Oryza sativa Japonica Group cDNA clone:002-118-C11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638101.10.0B-box zinc finger protein 22
TrEMBLB8AZ450.0B8AZ45_ORYSI; Uncharacterized protein
STRINGORUFI05G07170.10.0(Oryza rufipogon)
STRINGOS05T0204600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.12e-42light-regulated zinc finger protein 1