PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

BGIOSGA018884-PA

Common Name

OsI_18311

Organism

Oryza sativa subsp. indica

Taxonomic ID

39946

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

EIL

Protein Properties

Length: 423aa MW: 47137.4 Da PI: 6.5623

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA018884-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	100.4	3.8e-31	1	53	49	101
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 49 msraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvef 101 msraQD iLkYMlk+mevcnaqGfvYgiipekgkpv++asd+Lr+WWkek + BGIOSGA018884-PA 1 MSRAQDEILKYMLKMMEVCNAQGFVYGIIPEKGKPVSSASDNLRSWWKEKKTN 53 9************************************************9655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	6.8E-30	1	51	No hit	No description
SuperFamily	SSF52058	1.09E-6	118	276	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	2.0E-5	165	281	IPR032675	Leucine-rich repeat domain, L domain-like
SuperFamily	SSF52058	1.09E-6	309	364	IPR032675	Leucine-rich repeat domain, L domain-like
Gene3D	G3DSA:3.80.10.10	2.0E-5	314	321	IPR032675	Leucine-rich repeat domain, L domain-like

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MSRAQDEILK YMLKMMEVCN AQGFVYGIIP EKGKPVSSAS DNLRSWWKEK KTNSEIGENL 60 LKGDLWDPDI SDGSVVQRVG DDDSQHGAST LGSPIPFLPE GQTFSCKVDN ILRNHSAIGL 120 KTLTLNLNDD HATFPYVDSW LQVAFTAGIE ELTLRLHEKY NFPCSLLSDG VRKSIRYLEL 180 KFCAFHPTVE VGPLRSLTTL YLNSVRITGD ELECLLSNSL ALERLLLIDI KDIVILKIPC 240 LQQQLNSLGV MLCQGLEVVN TPMLPSKFLH LKHLTLSMIS GSAFSPSYDY FSLVSQGRME 300 HESVFGGGSS AHLRQLPELH RHDRLKSVEI MGFSSAKGLV ELTCCIVKKA VSLERLVLNT 360 LRHNSCCSKE YIPPYSPFNK VVLDEAFRAV AAIRSYIQDE VPPEVNLTVV EPCARCHSFC 420 ASS

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MSRAQDEILK YMLKMMEVCN AQGFVYGIIP EKGKPVSSAS DNLRSWWKEK KTNSEIGENL  60
LKGDLWDPDI SDGSVVQRVG DDDSQHGAST LGSPIPFLPE GQTFSCKVDN ILRNHSAIGL  120
KTLTLNLNDD HATFPYVDSW LQVAFTAGIE ELTLRLHEKY NFPCSLLSDG VRKSIRYLEL  180
KFCAFHPTVE VGPLRSLTTL YLNSVRITGD ELECLLSNSL ALERLLLIDI KDIVILKIPC  240
LQQQLNSLGV MLCQGLEVVN TPMLPSKFLH LKHLTLSMIS GSAFSPSYDY FSLVSQGRME  300
HESVFGGGSS AHLRQLPELH RHDRLKSVEI MGFSSAKGLV ELTCCIVKKA VSLERLVLNT  360
LRHNSCCSKE YIPPYSPFNK VVLDEAFRAV AAIRSYIQDE VPPEVNLTVV EPCARCHSFC  420
ASS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.10423	4e-65	callus\| flower\| leaf\| panicle\| root\| seed\| stem\| vegetative meristem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115474158	4e-65

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012613	0.0	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020200738.1	1e-78	uncharacterized protein LOC109786578
TrEMBL	B8AXK8	0.0	B8AXK8_ORYSI; Uncharacterized protein
STRING	ONIVA05G02020.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP49	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	2e-23	ETHYLENE-INSENSITIVE3-like 1