PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI10G20190.4

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

STAT

Protein Properties

Length: 655aa MW: 72707.8 Da PI: 5.1837

Description

STAT family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI10G20190.4	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	STAT	187.4	1.7e-58	223	343	1	121
STAT 1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k ORUFI10G20190.4 223 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 315 79********7.*****************9****************************************************** PP STAT 94 kypfleavskpirCisrsrntrsssltk 121 +y+flea+skpirCisr+r++r+++++k ORUFI10G20190.4 316 RYTFLEAYSKPIRCISRNRTSRPLGSAK 343 ********************988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55550	3.04E-5	572	641	IPR000980	SH2 domain
PROSITE profile	PS50001	9.366	579	655	IPR000980	SH2 domain

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence Send to blast
MGLTYSPTNR GRRTKPSIAA SGDGGGGAGI CGGGGDRYYE LSDVRIELDL REEVAEGGGD 60 KVPFLALGEG NKLILFPLLG FHREAPTPDS SYPWTDITNL TEVNECPLDN WFHVGCEVTE 120 NIMRLHIDGD LVAETHLHSL YNEPDYQDDA NQINLLGSED KLEGYVYNME LSCMLGNIQQ 180 QFAKNPPFKL SIDYSCSDGI EEGDDGIWNI VGGKASCRRN FILEVILVDA FGEAAKDREI 240 VASLVYADNG ALVEKSRDDS EPPLLISCDG IEYPAVSRPL PIIRGRALFK LKISQLSSKC 300 DNKLFRIFFS TLGMKRYTFL EAYSKPIRCI SRNRTSRPLG SAKRIGSASM DDIKSINNCE 360 GFGHSGKANG RLQTHDPSSV NKHAKKMVLD KGAQDVMVSD STASDYDSMD AGSSWSLSDG 420 DDVESFSDAE IFRYCLDGTH ERSKFLRAAA PSVNEDDLIK LANQVSLYSG CTHHRNQILI 480 SKQLLQEGAD IWSIISKNNE RALWSSAVPE MKAKFLEIVH PSNRGLSEQD FEVLRGIAGC 540 GDDIGRDEFD KLWSWLYPVA IALSKDKINR LWDFTAHRWI EGLITLQETE NALRSSRDRL 600 MKPGTFVLRF PTTRSWPHPD AGSLVVTYVG SDNSIHHRLL SLDVRVDRLP SSMQS

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence Send to blast

MGLTYSPTNR GRRTKPSIAA SGDGGGGAGI CGGGGDRYYE LSDVRIELDL REEVAEGGGD  60
KVPFLALGEG NKLILFPLLG FHREAPTPDS SYPWTDITNL TEVNECPLDN WFHVGCEVTE  120
NIMRLHIDGD LVAETHLHSL YNEPDYQDDA NQINLLGSED KLEGYVYNME LSCMLGNIQQ  180
QFAKNPPFKL SIDYSCSDGI EEGDDGIWNI VGGKASCRRN FILEVILVDA FGEAAKDREI  240
VASLVYADNG ALVEKSRDDS EPPLLISCDG IEYPAVSRPL PIIRGRALFK LKISQLSSKC  300
DNKLFRIFFS TLGMKRYTFL EAYSKPIRCI SRNRTSRPLG SAKRIGSASM DDIKSINNCE  360
GFGHSGKANG RLQTHDPSSV NKHAKKMVLD KGAQDVMVSD STASDYDSMD AGSSWSLSDG  420
DDVESFSDAE IFRYCLDGTH ERSKFLRAAA PSVNEDDLIK LANQVSLYSG CTHHRNQILI  480
SKQLLQEGAD IWSIISKNNE RALWSSAVPE MKAKFLEIVH PSNRGLSEQD FEVLRGIAGC  540
GDDIGRDEFD KLWSWLYPVA IALSKDKINR LWDFTAHRWI EGLITLQETE NALRSSRDRL  600
MKPGTFVLRF PTTRSWPHPD AGSLVVTYVG SDNSIHHRLL SLDVRVDRLP SSMQS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK070829	0.0	AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015614085.1	0.0	SH2 domain-containing protein A isoform X2
TrEMBL	A0A0E0R2N6	0.0	A0A0E0R2N6_ORYRU; Uncharacterized protein
STRING	ONIVA10G21500.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78540.1	1e-137	SH2 domain protein B