PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI10G20190.3
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family STAT
Protein Properties Length: 676aa    MW: 75100.5 Da    PI: 5.2663
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI10G20190.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT187.31.8e-582233431121
             STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveks.ddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklk 93 
                      l+v+l++a+g+++ kd e+vasL+yad+g++veks dd+e+pLLis+dG+e+++++rpl+++rGra+fklkisqLsskcdn+Lfri f+++ +k
  ORUFI10G20190.3 223 LEVILVDAFGEAA-KDREIVASLVYADNGALVEKSrDDSEPPLLISCDGIEYPAVSRPLPIIRGRALFKLKISQLSSKCDNKLFRIFFSTLGMK 315
                      79**********7.*********************9********************************************************** PP

             STAT  94 kypfleavskpirCisrsrntrsssltk 121
                      +y+flea+skpirCisr+r++r+++++k
  ORUFI10G20190.3 316 RYTFLEAYSKPIRCISRNRTSRPLGSAK 343
                      **********************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF555503.04E-5593662IPR000980SH2 domain
PROSITE profilePS500019.366600676IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MGLTYSPTNR GRRTKPSIAA SGDGGGGAGI CGGGGDRYYE LSDVRIELDL REEVAEGGGD  60
KVPFLALGEG NKLILFPLLG FHREAPTPDS SYPWTDITNL TEVNECPLDN WFHVGCEVTE  120
NIMRLHIDGD LVAETHLHSL YNEPDYQDDA NQINLLGSED KLEGYVYNME LSCMLGNIQQ  180
QFAKNPPFKL SIDYSCSDGI EEGDDGIWNI VGGKASCRRN FILEVILVDA FGEAAKDREI  240
VASLVYADNG ALVEKSRDDS EPPLLISCDG IEYPAVSRPL PIIRGRALFK LKISQLSSKC  300
DNKLFRIFFS TLGMKRYTFL EAYSKPIRCI SRNRTSRPLG SAKRIGSASM DDIKSINNCE  360
GFGHSGKANG RLQTHDPSSV VCFHPSKFSK IEDDVQKTSS QNKHAKKMVL DKGAQDVMVS  420
DSTASDYDSM DAGSSWSLSD GDDVESFSDA EIFRYCLDGT HERSKFLRAA APSVNEDDLI  480
KLANQVSLYS GCTHHRNQIL ISKQLLQEGA DIWSIISKNN ERALWSSAVP EMKAKFLEIV  540
HPSNRGLSEQ DFEVLRGIAG CGDDIGRDEF DKLWSWLYPV AIALSKDKIN RLWDFTAHRW  600
IEGLITLQET ENALRSSRDR LMKPGTFVLR FPTTRSWPHP DAGSLVVTYV GSDNSIHHRL  660
LSLDVRVDRL PSSMQS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0708290.0AK070829.1 Oryza sativa Japonica Group cDNA clone:J023065P16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614084.10.0SH2 domain-containing protein A isoform X1
TrEMBLA0A0E0R2N50.0A0A0E0R2N5_ORYRU; Uncharacterized protein
STRINGONIVA10G21500.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.11e-136SH2 domain protein B