PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G23880.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 206aa    MW: 21232.3 Da    PI: 8.9626
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G23880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-161765255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      y+G+r  +++g+Wv+eIr+p+    + +r++lg+f tae+Aa a++ a+++l+g
  ORUFI04G23880.1 17 FYRGIR--SRSGKWVSEIREPR----KaRRIWLGTFPTAEMAAVAYDVAARALRG 65
                     69***6..678*********94....36*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.5081773IPR001471AP2/ERF domain
SMARTSM003804.5E-291779IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-181774IPR016177DNA-binding domain
PfamPF008471.1E-81865IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.3E-281874IPR001471AP2/ERF domain
CDDcd000184.62E-251875No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSDHGPPPPR SSGKHPFYRG IRSRSGKWVS EIREPRKARR IWLGTFPTAE MAAVAYDVAA  60
RALRGPDAAL NFPDLAASRT APPASSSADD IRAAAAAAAA SLQHDRAGGG IAPAASGSAH  120
QQRGGSSAAA RTTAGSGGAQ QEGSSGAGAG SHQYFLDEEA LFETPQFLRN MAAGMMMSPP  180
RLSPSSSDDS PDPSEAGGSL WSYRDP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-131173163ATERF1
3gcc_A3e-131173163ATERF1
5wx9_A3e-1314731172Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6070010.0AL607001.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088I22, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880363.11e-142ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ903e-45ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A0E0PCW41e-141A0A0E0PCW4_ORYRU; Uncharacterized protein
TrEMBLB9FC281e-141B9FC28_ORYSJ; Os04g0572200 protein
STRINGORUFI04G23880.11e-142(Oryza rufipogon)
STRINGOS04T0572200-001e-142(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36542762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.11e-20ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]