PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI04G03370.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 72aa    MW: 8133.86 Da    PI: 10.602
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI04G03370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR23.98.2e-0840641438
              TCR 14 lkkYCeCfaagkkCseeCkCedCkN 38
                     l + CeC ++++ C+ +C+C +C N
  ORUFI04G03370.1 40 LELVCECLKHEVRCTAKCRCIECGN 64
                     6778*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036387.3E-63864IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MGHARLHFLL FLVSASADCL LRPPLRLRRT SAPLRMSKRL ELVCECLKHE VRCTAKCRCI  60
ECGNGLGIKR GK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126126e-41CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0P5E25e-43A0A0E0P5E2_ORYRU; Uncharacterized protein
STRINGORUFI04G03370.22e-43(Oryza rufipogon)