PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI01G34980.1
Organism
Oryza rufipogon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CPP
Protein Properties Length: 575aa    MW: 61796.3 Da    PI: 9.5744
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI01G34980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR413.7e-13158196241
              TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                      +kk CnCk+skClk+YCeCfa+g++C+  C+C++C+N+ +
  ORUFI01G34980.1 158 KKKCCNCKHSKCLKLYCECFASGVYCDG-CNCSNCFNNVK 196
                      799*************************.********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-14157197IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163424.356158283IPR005172CRC domain
PfamPF036381.5E-9159194IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MAGKEQQGGG GPPPPPRAPV PAASSQPPIK KLVRQLDFTS AALAGNPAMA AAAAAVSRAL  60
QPRAVPVGFP QPQQLRAHLP VGVPQQLHPR GLPVMRSHHV VHVPLPRPAV AVAVPVPQVR  120
PAQPQPVPRP PVAVPLKPES PKPPRARLYE GKDGTPTKKK CCNCKHSKCL KLYCECFASG  180
VYCDGCNCSN CFNNVKNETA RREAIDATLE RNPDAFRPKI GSSPHANRNN MEAAGDLPLV  240
GKHNKGCHCK KSGCLKKYSN AAVNGAIGGA AFSSPSTSRK RKHIDPSLDH SAKENGAHRT  300
NHVPQKNGMP SDGPLPINQP VHPPTLGPFK VTYRPLLADI VQPGDVKELC KLLVVVSGNA  360
AKAYAGKKSQ EDKVVEKEDE MGGKREGEIG GSLASTNHDR EENNKDPNNQ KASADDPSTG  420
GTRAGKASLE ESKHDCNDDQ KSNRPMSPGT LALMCDEQDT MFMTSQNVVP QQPAPVNQNQ  480
SELYAEQERC VLTEFRDCLH KLVTFGRMKE EKFSMAIKSE VPAHPMQANG VSRIPYSKEV  540
DVPVVKTFLQ SSSRHPAAGN SATGHLDKKP KHENT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-181592581199Protein lin-54 homolog
5fd3_B3e-181592581199Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1221120.0AK122112.1 Oryza sativa Japonica Group cDNA clone:J033127O09, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621699.10.0protein tesmin/TSO1-like CXC 5 isoform X1
TrEMBLA0A0E0N2S10.0A0A0E0N2S1_ORYRU; Uncharacterized protein
STRINGOGLUM01G35920.10.0(Oryza glumipatula)
STRINGONIVA01G36110.20.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-82Tesmin/TSO1-like CXC domain-containing protein