PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ORUFI01G08780.1

Organism

Oryza rufipogon

Taxonomic ID

4529

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 388aa MW: 44087.3 Da PI: 6.7783

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ORUFI01G08780.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	40.4	7e-13	65	117	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46 +g+WT +E +l +++k++G ++Wk++ + g +Rt++++k++w++ ORUFI01G08780.1 65 KGPWTSWENSILEKYIKKHGERNWKLVQKNTGllrcgksCRRTDNEIKNYWNT 117 79******************************999998878999999999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.595	60	123	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-12	61	121	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.05E-9	62	121	IPR009057	Homeodomain-like
SMART	SM00717	2.6E-10	64	121	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-11	65	117	IPR001005	SANT/Myb domain
CDD	cd00167	3.66E-9	67	117	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MRGHRSRVCG DGGLRSTCVR DRMHRSGSDP DSDRAHWYMS NSDDESFVDK DKDCRRGTVA 60 PLLKKGPWTS WENSILEKYI KKHGERNWKL VQKNTGLLRC GKSCRRTDNE IKNYWNTRIK 120 KCKNNRWLLY PANACNDALN EDQYGSVDPS VREKLTNNQL EDTTSMYSAP QFSYASISNI 180 LDRRLASKDY DSIEDQRNRI EVAAEYEISL PVLKTTNNDI FPSASIFANH GISNGNLSAL 240 STTDALQMEL PLIQFDPNNQ FIYSRDYATH LTNLALLNDQ SEELLNHIDV LNYVVMKKEL 300 SGGTHTSMTP SNELVVPRYE GDVPPLQDDF TPYLYLNGAN LSIFEDIKSH CGFENVANLG 360 VVADSLKLCE SESMRRTNSK TKTRTTLA

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MRGHRSRVCG DGGLRSTCVR DRMHRSGSDP DSDRAHWYMS NSDDESFVDK DKDCRRGTVA  60
PLLKKGPWTS WENSILEKYI KKHGERNWKL VQKNTGLLRC GKSCRRTDNE IKNYWNTRIK  120
KCKNNRWLLY PANACNDALN EDQYGSVDPS VREKLTNNQL EDTTSMYSAP QFSYASISNI  180
LDRRLASKDY DSIEDQRNRI EVAAEYEISL PVLKTTNNDI FPSASIFANH GISNGNLSAL  240
STTDALQMEL PLIQFDPNNQ FIYSRDYATH LTNLALLNDQ SEELLNHIDV LNYVVMKKEL  300
SGGTHTSMTP SNELVVPRYE GDVPPLQDDF TPYLYLNGAN LSIFEDIKSH CGFENVANLG  360
VVADSLKLCE SESMRRTNSK TKTRTTLA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	D88621	0.0	D88621.1 Oryza sativa mRNA for OSMYB5, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881555.1	1e-158	transcription factor GAMYB
TrEMBL	A0A0E0MTD2	0.0	A0A0E0MTD2_ORYRU; Uncharacterized protein
STRING	ORUFI01G08780.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15408	10	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	5e-21	myb domain protein 101