PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OPUNC12G16510.1

Organism

Oryza punctata

Taxonomic ID

4537

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 1234aa MW: 135009 Da PI: 6.0608

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OPUNC12G16510.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.1	2.4e-15	459	498	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + OPUNC12G16510.1 459 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCHGCLNKPS 498 689**********************************976 PP
2	TCR	41.9	2e-13	958	995	3	40
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 +k+C+CkkskClk+YC Cfa+g++Cse+C C+ C Nk+ OPUNC12G16510.1 958 CKSCSCKKSKCLKLYCVCFASGSHCSESCGCDPCYNKS 995 79**********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	9.6E-15	458	499	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	17.628	459	551	IPR005172	CRC domain
Pfam	PF03638	1.9E-11	461	496	IPR005172	CRC domain
Gene3D	G3DSA:3.10.110.10	8.8E-24	766	855	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
SuperFamily	SSF54495	1.36E-25	766	858	IPR016135	Ubiquitin-conjugating enzyme/RWD-like
PROSITE profile	PS50127	13.975	770	853	IPR000608	Ubiquitin-conjugating enzyme E2
SMART	SM00212	5.6E-4	770	915	No hit	No description
Pfam	PF00179	3.0E-9	797	853	IPR000608	Ubiquitin-conjugating enzyme E2
SMART	SM01114	4.5E-9	956	997	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	14.132	957	1040	IPR005172	CRC domain
Pfam	PF03638	3.6E-9	959	994	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 1234 aa Download sequence Send to blast
MDTPDRPPRA AAAAAAATAA VEDSPVFNFI NSLSPIPPPK PSDSAHNVQL FKSSDLAPVS 60 SIFASPHVNP AKESKLPIRE DSVQLSRESH SPNSVRTRTG ATSSIRMIRC KNIVSENCSI 120 TCYLNEPNSS KSSQSIQLCG GSAESDKNQN TDGKKDLSTE KVRTDLEFVL LDQSGPEKMD 180 SSQSGNNVCE NQLSEQHKDE LGSFDGGYMI AHQPDSDMLR LAPPFESETQ LVSETLQTDN 240 VYCESLLADG PGGSYIQNSA PDPHLYWAGA VEGSATDYTP QMLPGACQSQ LVPNDPICNK 300 LNEPSDYMPM DQNVSSQNLR GMRRRCLFNE KGGAANKGAK NTSVRHSTNS TTPRRKISSS 360 DNNLKTLRTP PCALPGIGLH LNALTTVPKD KTVPHNDTQS SLNQASNVPS AVDSSPPTAD 420 PHTVNADSSQ TAMVAYVGES SQGSPKKKRH KFDNGDGTSC KRCSCKKSKC LKLYCECFHA 480 GVFCSEPCSC HGCLNKPSNM ETVLSTREQI ESRNPLAFAP KVIRTEPGQE LAGGVGCSVS 540 CRCEGCKNAF GRREGVALLG IEETKRGCEE KDGGVKEETT DNDKQLVIYQ DSINLTPAES 600 VLATPSVVDC RPLVALPPLS SKKPRSSTKL GGYSSRLEGH LKSDILLSPF ESYAEMMLGD 660 GYILDYLWFL RGPDRQHLSL HQSWFYHALE FDDQPREFCF GKFCSEAEVI PCFLESGMPN 720 NNPVRVLYTY YQDVQITPRQ EPPVAGGSSA PEWHDAIVPA RLRRRVPRNF RLLEELERGE 780 KGIGDGSVSY GMDDADDIYM RSWTGTIIGP HNTVHEGRIY QLKLFCDKDY PDRPPTVKFH 840 SRINMTCVNP ENGLLEASGS DPDDPLLRVV PPPLPPPPPP PPTAPAPVLL APYENASAEA 900 AFAVPLPAAA VEANGNSEKK KKSVAFSPSP PRFFFCSVLV LLAFDFLIWR KADEGEGCKS 960 CSCKKSKCLK LYCVCFASGS HCSESCGCDP CYNKSIHGVP RSTPALPSKA VQTSEAGQDS 1020 VGGAGCSINC KCDDCKNPYG RKVGVILDGK NILAGPTPNE RNGTEADSSD DEEDDYYMNR 1080 PLSPVSPSPV SRESSFQQET LVGVEVQTMN GHLYPKPLTQ VRPESWQLTR RPTEEVRGEA 1140 WHYLRRPSED GTSDVMEGHA DPKFQRDNKQ LENHVDRYSI PRCIEVMNAM ADLSPIEKSL 1200 APDIFLDPSN REIFLSLTVD IRTMWLKRKM KSLV

Sequence ? help Back to Top

Protein Sequence Length: 1234 aa Download sequence Send to blast

MDTPDRPPRA AAAAAAATAA VEDSPVFNFI NSLSPIPPPK PSDSAHNVQL FKSSDLAPVS  60
SIFASPHVNP AKESKLPIRE DSVQLSRESH SPNSVRTRTG ATSSIRMIRC KNIVSENCSI  120
TCYLNEPNSS KSSQSIQLCG GSAESDKNQN TDGKKDLSTE KVRTDLEFVL LDQSGPEKMD  180
SSQSGNNVCE NQLSEQHKDE LGSFDGGYMI AHQPDSDMLR LAPPFESETQ LVSETLQTDN  240
VYCESLLADG PGGSYIQNSA PDPHLYWAGA VEGSATDYTP QMLPGACQSQ LVPNDPICNK  300
LNEPSDYMPM DQNVSSQNLR GMRRRCLFNE KGGAANKGAK NTSVRHSTNS TTPRRKISSS  360
DNNLKTLRTP PCALPGIGLH LNALTTVPKD KTVPHNDTQS SLNQASNVPS AVDSSPPTAD  420
PHTVNADSSQ TAMVAYVGES SQGSPKKKRH KFDNGDGTSC KRCSCKKSKC LKLYCECFHA  480
GVFCSEPCSC HGCLNKPSNM ETVLSTREQI ESRNPLAFAP KVIRTEPGQE LAGGVGCSVS  540
CRCEGCKNAF GRREGVALLG IEETKRGCEE KDGGVKEETT DNDKQLVIYQ DSINLTPAES  600
VLATPSVVDC RPLVALPPLS SKKPRSSTKL GGYSSRLEGH LKSDILLSPF ESYAEMMLGD  660
GYILDYLWFL RGPDRQHLSL HQSWFYHALE FDDQPREFCF GKFCSEAEVI PCFLESGMPN  720
NNPVRVLYTY YQDVQITPRQ EPPVAGGSSA PEWHDAIVPA RLRRRVPRNF RLLEELERGE  780
KGIGDGSVSY GMDDADDIYM RSWTGTIIGP HNTVHEGRIY QLKLFCDKDY PDRPPTVKFH  840
SRINMTCVNP ENGLLEASGS DPDDPLLRVV PPPLPPPPPP PPTAPAPVLL APYENASAEA  900
AFAVPLPAAA VEANGNSEKK KKSVAFSPSP PRFFFCSVLV LLAFDFLIWR KADEGEGCKS  960
CSCKKSKCLK LYCVCFASGS HCSESCGCDP CYNKSIHGVP RSTPALPSKA VQTSEAGQDS  1020
VGGAGCSINC KCDDCKNPYG RKVGVILDGK NILAGPTPNE RNGTEADSSD DEEDDYYMNR  1080
PLSPVSPSPV SRESSFQQET LVGVEVQTMN GHLYPKPLTQ VRPESWQLTR RPTEEVRGEA  1140
WHYLRRPSED GTSDVMEGHA DPKFQRDNKQ LENHVDRYSI PRCIEVMNAM ADLSPIEKSL  1200
APDIFLDPSN REIFLSLTVD IRTMWLKRKM KSLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2a4d_A	3e-30	765	856	23	114	Ubiquitin-conjugating enzyme E2 variant 1
2hlw_A	3e-30	765	856	33	124	Ubiquitin-conjugating enzyme E2 variant 1
6d6i_A	2e-30	765	856	6	97	Ubiquitin-conjugating enzyme E2 variant 1
6d6i_D	2e-30	765	856	6	97	Ubiquitin-conjugating enzyme E2 variant 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK073942	0.0	AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620275.1	0.0	protein tesmin/TSO1-like CXC 2
TrEMBL	A0A0E0MPE4	0.0	A0A0E0MPE4_ORYPU; Uncharacterized protein
STRING	OPUNC12G16510.1	0.0	(Oryza punctata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12746	26	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	1e-37	TESMIN/TSO1-like CXC 2