PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OPUNC06G14730.1
Organism
Oryza punctata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 213aa    MW: 23140 Da    PI: 5.8072
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OPUNC06G14730.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF74.49.2e-241966249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     +ien  +rqvtfskRr+g++KKA+ELS+LC+a vav+ fs+ g+++ +
  OPUNC06G14730.1 19 PIENGGRRQVTFSKRRHGLFKKASELSTLCGASVAVVAFSTAGNVFAF 66
                     69******************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006625.6791070IPR002100Transcription factor, MADS-box
SMARTSM004321.3E-271069IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-251182IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-191232IPR002100Transcription factor, MADS-box
PfamPF003194.2E-232066IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-193247IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-194768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MVRSRGRPSL GRQRIEIRPI ENGGRRQVTF SKRRHGLFKK ASELSTLCGA SVAVVAFSTA  60
GNVFAFGEPT VDAVLRRFDP LHPVAADDGA ALAPAPAGGG DAAPPGDDKE LDVLRRAADQ  120
TKEQVTAEQA RMRDVGDKIT QAMAAAGKRF WWEADVEALG EAELPEFARA LERLRDSVRR  180
HADALLSTAA LPQPPQQQQQ EEVPELDVSD YSF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0039511e-103AP003951.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OJ1288_C01.
GenBankAP0149621e-103AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642334.17e-87agamous-like MADS-box protein AGL62
TrEMBLA0A0E0LBZ61e-150A0A0E0LBZ6_ORYPU; Uncharacterized protein
STRINGOPUNC06G14730.11e-151(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-27AGAMOUS-like 62