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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G18290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 309aa MW: 34830.4 Da PI: 7.6726 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.4 | 7e-17 | 239 | 273 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + kTp+WR gp g+ktLCnaCG+++++ +l ONIVA12G18290.1 239 CTHCLSYKTPQWRTGPLGPKTLCNACGVRFKSGRL 273 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 0.0023 | 154 | 203 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-5 | 154 | 197 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-4 | 158 | 200 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 2.0E-13 | 233 | 287 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.187 | 233 | 269 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.14E-13 | 237 | 296 | No hit | No description |
CDD | cd00202 | 3.15E-12 | 238 | 295 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-12 | 238 | 271 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.3E-14 | 239 | 273 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 239 | 264 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MDVHPPNAAA SSLEELFPHQ PATESDRSGI EWLSVYVEDC LSTSASCTNP VSAELPPITM 60 ASQGAAKPKL PPRSSTNARK KKRSLASVIS DTDDQHCITL FVEPPLLLLD HKDWLAESEL 120 ILPKKDKDEE LVQEQEQEEE ENYKMSAGMQ FQQEQLVITC SYCLSSQSPQ WWDGPSGPTC 180 DACRLRIEAR NGHTTSSKKR YGQEIDKEQD IGKRRDKKKI KKAVYVNDEL LSEEPMKRCT 240 HCLSYKTPQW RTGPLGPKTL CNACGVRFKS GRLLPEYRPA NSPTFVSDIH SNSHKKVMQL 300 RNSVPHPRK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 213 | 221 | RRDKKKIKK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK101421 | 0.0 | AK101421.1 Oryza sativa Japonica Group cDNA clone:J033038C04, full insert sequence. | |||
GenBank | EU847016 | 0.0 | EU847016.1 Oryza sativa Japonica Group clone KCS030C12 GATA zinc finger protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618342.1 | 0.0 | uncharacterized protein LOC4352838 | ||||
TrEMBL | A0A0E0JCN7 | 0.0 | A0A0E0JCN7_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0RK95 | 0.0 | A0A0E0RK95_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2ZMY1 | 0.0 | A2ZMY1_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1R813 | 0.0 | I1R813_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q2QLX6 | 0.0 | Q2QLX6_ORYSJ; GATA zinc finger family protein, expressed | ||||
STRING | ORUFI12G21640.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS12T0624900-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA12G18290.2 | 0.0 | (Oryza nivara) | ||||
STRING | ORGLA12G0166900.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5962 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 1e-35 | GATA transcription factor 2 |