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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G12410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GRF | ||||||||
Protein Properties | Length: 389aa MW: 41562.5 Da PI: 8.8781 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 74.3 | 1.3e-23 | 86 | 130 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e ONIVA12G12410.1 86 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 130 689***************************************986 PP | |||||||
2 | QLQ | 58.8 | 1.7e-20 | 37 | 73 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an+PvP+ Ll++i++ ONIVA12G12410.1 37 GPFTPTQWMELEHQALIYKHIVANAPVPAGLLLPIRR 73 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 1.3E-11 | 37 | 73 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.836 | 38 | 73 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 6.0E-15 | 38 | 72 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.527 | 86 | 130 | IPR014977 | WRC domain |
Pfam | PF08879 | 8.2E-20 | 88 | 129 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MAMATPTTNG SFLLGSGLDC GSSDVARMQG VLARVRGPFT PTQWMELEHQ ALIYKHIVAN 60 APVPAGLLLP IRRSLHPPLG YSGSADSEPG RCRRTDGKKW RCSRDAVVDQ KYCERHINRG 120 RHRSRKHVEG QSSHAAKATV PAIAQPPIGA SNGKLSGSHG VSNELTKTLA TNRMMLDKAN 180 LIERSQDYTN QQHNILQNNT KGDNWSEEMS SQADYAVIPA GSLMNTPQSA NLNPIPQQQR 240 CKQSLFGKGI QHDDIQLSIS IPVDNSDLPT NCNKAQMDHV VGGSSNGGNN TRASWIPGSW 300 EASIGGPLGE FFTNTSSASD DKGKSRHPPS LNLLADGHTT SPQLQSPTGV LQMTSFSSVP 360 SSTVSSPAGS LCNGLLTSGL VNAQTVQTL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK241557 | 0.0 | AK241557.1 Oryza sativa Japonica Group cDNA, clone: J065178H17, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618985.1 | 0.0 | growth-regulating factor 7 isoform X2 | ||||
Swissprot | Q6AWY2 | 0.0 | GRF7_ORYSJ; Growth-regulating factor 7 | ||||
TrEMBL | A0A0E0JAE0 | 0.0 | A0A0E0JAE0_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA12G12410.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12960 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 2e-46 | growth-regulating factor 2 |