PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

ONIVA12G05970.1

Organism

Oryza nivara

Taxonomic ID

4536

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 260aa MW: 28650.8 Da PI: 5.0048

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
ONIVA12G05970.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.5	6.3e-25	99	189	2	89
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+ +GF r+ +s++s +++ +++++fvCs+eg +++++ + + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l ONIVA12G05970.1 99 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 189 9*****************944567789*******9999888787888999***********999.9************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.3E-22	99	189	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDDAAA AAAAAAEQDV 60 MRDFAPGDGD GDGDADAEND PKEPVLGMTF ESDEAAKMFY NEYARWLGFP FRVGRSRRSK 120 GMEEVVIMKR FVCSREGAHK KKQPSTSGEA TSKRERASMR EGCNAMMEVV RDKDHWVVSK 180 LEKAHNHSLG IGTRYGYLRA RGLPDVFGIR SASKISVNGT VVGQEAKAHD RNEGQLRDAY 240 LINVKSQMQT AAKTRNHISH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012620	0.0	CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620344.1	1e-129	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0E0J828	0.0	A0A0E0J828_ORYNI; Uncharacterized protein
STRING	ONIVA12G05970.1	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	6e-21	FAR1 family protein