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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA12G03860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 414aa MW: 43465.8 Da PI: 10.7694 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 45.8 | 8.5e-15 | 151 | 183 | 1 | 33 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 C nC + +Tp+WR+gp g +tLCnaCG++ r ONIVA12G03860.1 151 CLNCDAVETPQWRSGPMGRSTLCNACGVRLRAV 183 99**************************99865 PP | |||||||
2 | GATA | 56.8 | 3e-18 | 279 | 313 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+t+Tp+WR+gp g tLCnaCG++yr +l ONIVA12G03860.1 279 CVHCGSTETPQWREGPTGRGTLCNACGVRYRQGRL 313 *******************************9886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PRINTS | PR01217 | 8.1E-14 | 78 | 90 | No hit | No description |
PRINTS | PR01217 | 8.1E-14 | 97 | 113 | No hit | No description |
SuperFamily | SSF57716 | 1.66E-12 | 144 | 186 | No hit | No description |
PROSITE profile | PS50114 | 12.097 | 145 | 184 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.0E-12 | 145 | 196 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 4.2E-13 | 149 | 183 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.25E-9 | 150 | 184 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 151 | 176 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 3.8E-12 | 151 | 182 | IPR000679 | Zinc finger, GATA-type |
PRINTS | PR01217 | 8.1E-14 | 201 | 217 | No hit | No description |
PRINTS | PR01217 | 8.1E-14 | 220 | 237 | No hit | No description |
PRINTS | PR01217 | 8.1E-14 | 248 | 273 | No hit | No description |
SMART | SM00401 | 3.1E-16 | 273 | 323 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.716 | 273 | 309 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-14 | 275 | 335 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 9.1E-15 | 277 | 311 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.93E-15 | 278 | 335 | No hit | No description |
Pfam | PF00320 | 4.6E-16 | 279 | 313 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 279 | 304 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 414 aa Download sequence Send to blast |
MATVEGGIGE PPGLARERRP RLRRSVAATG DMDGDGDVGG GGGGGGGGGV RYVLALPAMA 60 SLAVLIAHLD AAVPVPRRPR SYLPRAVPMA WWAFRLPVFR PPPPPPPPPA KNPVKEEEGV 120 ARVVVVVAPP PPVDPGEEEA GKRAAKRARR CLNCDAVETP QWRSGPMGRS TLCNACGVRL 180 RAVGSLPEHR APAARTTTAA PASPPDSPIW TPGHKPPSSS PDIYLVRRTP KLPVTRPPRT 240 KQAPPTAPAP APPPPPPQPA SPKTKTKAKA KKPKRKRSCV HCGSTETPQW REGPTGRGTL 300 CNACGVRYRQ GRLLPEYRPK GSPTFSPSVH AANHRQVLEL RRQQRQSTNP STPPPPPVSA 360 AEPIPDEQKE EVVSVPVAAA APATDGGAAS SLDALLLDGP SAPLIVDGDD FLVS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK068306 | 0.0 | AK068306.1 Oryza sativa Japonica Group cDNA clone:J013136H07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620068.1 | 0.0 | vegetative cell wall protein gp1 | ||||
TrEMBL | A0A0E0J789 | 0.0 | A0A0E0J789_ORYNI; Uncharacterized protein | ||||
STRING | ORGLA12G0039500.1 | 0.0 | (Oryza glaberrima) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08010.2 | 4e-23 | GATA transcription factor 11 |