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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G16880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GeBP | ||||||||
Protein Properties | Length: 389aa MW: 41295.1 Da PI: 4.8784 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 92.3 | 5.5e-29 | 71 | 173 | 2 | 96 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgk..spsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.....aksgkepsfskehdqk 87 lfqrlw++e e+++L+G++df+a++g+ +++ d+ fy+ +++++sf+++ksqlveK+rrLKkK++ + ++ + ++f+++h+ ONIVA11G16880.1 71 LFQRLWTDEEELLILRGFLDFTARRGTtfASHQyDTGPFYDEIRRRLSFDFTKSQLVEKLRRLKKKYRLCAARmasspHAAAAGFAFRTPHEGA 164 79************************99877778***********************************99996666556677889******** PP DUF573 88 ifelskkiW 96 i++l++ iW ONIVA11G16880.1 165 IYDLARHIW 173 ********* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 4.2E-27 | 72 | 173 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 389 aa Download sequence Send to blast |
MAADELAASA SHSSSSSPAD EDDEEGTDSD GSNPDHAAAP HAPPEPTAAI PPPPPPPPPQ 60 PGPGAEDSRR LFQRLWTDEE ELLILRGFLD FTARRGTTFA SHQYDTGPFY DEIRRRLSFD 120 FTKSQLVEKL RRLKKKYRLC AARMASSPHA AAAGFAFRTP HEGAIYDLAR HIWPPALKRD 180 GTASDDDDIN PAAAAAAAAA VTTPVAMEDG FGGSAPTPTP TPRGRGGRRV RRRMAQEQEA 240 AALPSAPALT STDGAHQEPL VAAMENSFPQ ITQLPPVSET SPMPVTANGA NEEAVRSVLS 300 PLLKEFITSF AVAGQTGPGM GLNMGFGGAG LNADIAGLGF GIAALNPGVP GTDRWRQQQI 360 LELEVYLKRI ELVREQVTAA LDELRSSEG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012609 | 0.0 | CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015644705.2 | 0.0 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A0E0J395 | 0.0 | A0A0E0J395_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G16880.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 4e-19 | DNA-binding storekeeper protein-related transcriptional regulator |