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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G13590.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | Dof | ||||||||
Protein Properties | Length: 403aa MW: 40839.1 Da PI: 9.6676 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.3 | 3.9e-39 | 87 | 146 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e alkcprCdstntkfCyynnyslsqPr+fCk+CrryWt+GG+lrnvPvGgg+r+nk+s ONIVA11G13590.1 87 PEPALKCPRCDSTNTKFCYYNNYSLSQPRHFCKTCRRYWTRGGSLRNVPVGGGCRRNKRS 146 67899*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-36 | 71 | 145 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 6.6E-33 | 90 | 145 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.758 | 91 | 145 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 93 | 129 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 403 aa Download sequence Send to blast |
MVFPSVPAYL DPPNWNNQQG QPPRPANVGG GDAQHLPVGP TAAAAAPGEI GGLPTSSSSA 60 STAAAAAQQA RPNSMAERAR LARAPQPEPA LKCPRCDSTN TKFCYYNNYS LSQPRHFCKT 120 CRRYWTRGGS LRNVPVGGGC RRNKRSGKSS SSAAAGASSS SSKPSSSAAR QLPGGGASPM 180 PSAAASTQPG GAAAGAIIPP SGLSSMSHHL PFLGAMHPPG PNLGLTFSAG FQPLGGMHHH 240 VDTADQFPVA SGGGATIGAS LEQWRVQQQQ QQQPQQHQFP FLGGALELPP PPPMYQLGLE 300 ATRAAGTGAT AAAAFTLGQT SATATTSRQE GSMKLEDSKG LEMSLQRQYM AALRQGDGVW 360 GNNNGGNGGS DGGGNGGGGS WTMNFPGFHS SSGGGGDDGG GVL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC083942 | 0.0 | AC083942.8 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0002D01, from chromosome 3, complete sequence. | |||
GenBank | AC137698 | 0.0 | AC137698.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0014A21, from chromosome 3, complete sequence. | |||
GenBank | AP014959 | 0.0 | AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629100.1 | 0.0 | dof zinc finger protein DOF3.6 isoform X1 | ||||
TrEMBL | A0A0E0J242 | 0.0 | A0A0E0J242_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G13590.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12301 | 24 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55370.3 | 3e-42 | OBF-binding protein 3 |