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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G08300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | FAR1 | ||||||||
Protein Properties | Length: 418aa MW: 46675.3 Da PI: 6.0747 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 66.7 | 5.9e-21 | 194 | 276 | 2 | 82 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 fY++YA ++GF+vr sks s+ ++ i++r+fvC+++g ++++++ ++k+rr+ra+ r C a+l+v+++ +++w v++++ ONIVA11G08300.1 194 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCH 276 9**************************************999988787999****************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.0E-19 | 194 | 276 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MCAKICARIG DGGCISLDDE EVPPPVVPEL CAALPPPQPV AEVQVCSEEV LVIAVPVPNE 60 ERAIVLHKPD DAARNLLLGP LRPEFPLRVS PDWIHGLKST GLREARDLHG RDLHRALFEE 120 LTMDETSNLT MVPWVPVPSN SQEASTSGAA TTTTEMMDAE DTSMEDAAAV TGPSSAGEPA 180 AGMEFASPEE ARAFYCTYAA RAGFRVRSSK SFASRIDDAI IMRRFVCTRQ GLPSRKDTLL 240 DASKKRRNRA SARAACPAML QVNRRPSSRW LVSRCHSTLK DELKECVTEL ERIDEFESTW 300 RMLLSKYNLF GNEWLQTIYS IRHQWVPAYL KDSFFEEGAT SEEIYKTAKE ALQKAFAEIL 360 PQSGRLIRIM SMNMLLSPFR TDVELDALCQ KGNCINYRKQ QHNCTMSSIS HPLNHSFI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0J072 | 0.0 | A0A0E0J072_ORYNI; Uncharacterized protein | ||||
STRING | ONIVA11G08300.1 | 0.0 | (Oryza nivara) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18960.1 | 1e-15 | FAR1-related sequence 12 |