PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA11G08300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family FAR1
Protein Properties Length: 418aa    MW: 46675.3 Da    PI: 6.0747
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA11G08300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR166.75.9e-21194276282
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtkle 82 
                      fY++YA ++GF+vr sks  s+ ++ i++r+fvC+++g ++++++   ++k+rr+ra+ r  C a+l+v+++ +++w v++++
  ONIVA11G08300.1 194 FYCTYAARAGFRVRSSKSFASRIDDAIIMRRFVCTRQGLPSRKDTLldASKKRRNRASARAACPAMLQVNRRPSSRWLVSRCH 276
                      9**************************************999988787999****************************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-19194276IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MCAKICARIG DGGCISLDDE EVPPPVVPEL CAALPPPQPV AEVQVCSEEV LVIAVPVPNE  60
ERAIVLHKPD DAARNLLLGP LRPEFPLRVS PDWIHGLKST GLREARDLHG RDLHRALFEE  120
LTMDETSNLT MVPWVPVPSN SQEASTSGAA TTTTEMMDAE DTSMEDAAAV TGPSSAGEPA  180
AGMEFASPEE ARAFYCTYAA RAGFRVRSSK SFASRIDDAI IMRRFVCTRQ GLPSRKDTLL  240
DASKKRRNRA SARAACPAML QVNRRPSSRW LVSRCHSTLK DELKECVTEL ERIDEFESTW  300
RMLLSKYNLF GNEWLQTIYS IRHQWVPAYL KDSFFEEGAT SEEIYKTAKE ALQKAFAEIL  360
PQSGRLIRIM SMNMLLSPFR TDVELDALCQ KGNCINYRKQ QHNCTMSSIS HPLNHSFI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126190.0CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0J0720.0A0A0E0J072_ORYNI; Uncharacterized protein
STRINGONIVA11G08300.10.0(Oryza nivara)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.11e-15FAR1-related sequence 12