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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA11G05790.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 430aa MW: 44443.4 Da PI: 7.4807 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.2 | 1.1e-18 | 362 | 395 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 Cs+Cgt++Tp+WR gpdg+ tLCnaCG++ + + ONIVA11G05790.1 362 CSHCGTSETPQWRMGPDGPGTLCNACGIRSKMDR 395 *****************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.231 | 356 | 394 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 4.7E-17 | 356 | 406 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 4.13E-14 | 358 | 419 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.0E-15 | 360 | 395 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.53E-16 | 361 | 417 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 362 | 387 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.7E-16 | 362 | 396 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 430 aa Download sequence Send to blast |
MPKPTPSSSS FLDFTGGVDG DDDDPSCPFE GLCCPDDPLD QVLNFDSSDF GHVFFESLDV 60 ELFLPRGGPS RGAGEEDSKG AVERVAFGSS AAVESELGGV GGGGAGSEVS VPGGAGGGRG 120 EDMETEALDV KPVVGVGAGG AMGAHVAGGV GAPGAFPESK QLVPWPCAVG AGASAPGAAP 180 DNRLLALPDV RFDALTAEGA APGGERGKTI PDSVSKNGLP TLPGVRSATP TAPPATPFRL 240 EWDHAAAPSS SATTTPSDSS LSSPPSLSSV FPRIARVFPS RTKPRRRRTL RRQHWSLICP 300 LHLVPVAAAA RGKSISELNA SASASAGTDA GTPSINDGGG GSYHRRVVGR QRNRQVRKDR 360 RCSHCGTSET PQWRMGPDGP GTLCNACGIR SKMDRLLPEY RPSTSPSFNG DEHSNRHRKV 420 LKLREKKGRD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CP012619 | 0.0 | CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0E0IZ78 | 0.0 | A0A0E0IZ78_ORYNI; Uncharacterized protein | ||||
TrEMBL | A2ZC96 | 0.0 | A2ZC96_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA11G05790.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12777 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36240.1 | 4e-26 | GATA transcription factor 7 |