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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | ONIVA10G20780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | GATA | ||||||||
Protein Properties | Length: 387aa MW: 39620.8 Da PI: 7.77 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.7 | 6.5e-18 | 278 | 313 | 1 | 36 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkglk 36 C++C + kTp+WR gp g+ktLCnaCG+++++ +l+ ONIVA10G20780.1 278 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLM 313 ********************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.3E-16 | 272 | 322 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.253 | 272 | 308 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.09E-13 | 276 | 336 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.5E-13 | 276 | 310 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.34E-13 | 277 | 324 | No hit | No description |
Pfam | PF00320 | 1.4E-15 | 278 | 313 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 278 | 303 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MASEWEMAMG VDLGMGMSTY HNASGGIAAA PMMGHHGGGG GGGGYSAAHH HHHHYYGMPH 60 QAAMGDAMRV DDLLDLSNTP GAHDFFPASA AAAAAGDHGH HHHHHIGGMG EPSGATPSAT 120 SSDHQTSMLS FADDFYIPTE DAAELEWLSK FVDDSYSDMP NYQSSAHAAM AAAAASAANN 180 GGGSSAGQDS CLTAAPGRGA RSKRSRATAA AAAAWHSLVP RPPSQSSPSS SCSSSDFPSS 240 NKPSGTARPN GSGGGSRGKK SPGPAGAEVG MEAGVRRCTH CASEKTPQWR TGPLGPKTLC 300 NACGVRFKSG RLMPEYRPAA SPTFVLTQHS NSHRKVMELR RQKELLIIRG SHRDAAAAAA 360 AAAAAAAAGS AAATGRPELM FRDYGVC |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC069300 | 0.0 | AC069300.7 Oryza sativa chromosome 10 BAC OSJNBa0010C11 genomic sequence, complete sequence. | |||
GenBank | AK242292 | 0.0 | AK242292.1 Oryza sativa Japonica Group cDNA, clone: J075191F19, full insert sequence. | |||
GenBank | AP014966 | 0.0 | AP014966.1 Oryza sativa Japonica Group DNA, chromosome 10, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012618 | 0.0 | CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015613303.1 | 0.0 | GATA transcription factor 2 | ||||
Swissprot | O49741 | 4e-61 | GATA2_ARATH; GATA transcription factor 2 | ||||
TrEMBL | A0A0E0IWD6 | 0.0 | A0A0E0IWD6_ORYNI; GATA transcription factor | ||||
TrEMBL | A0A0E0R2D3 | 0.0 | A0A0E0R2D3_ORYRU; GATA transcription factor | ||||
TrEMBL | A2ZA51 | 0.0 | A2ZA51_ORYSI; GATA transcription factor | ||||
TrEMBL | Q94LQ6 | 0.0 | Q94LQ6_ORYSJ; GATA transcription factor | ||||
STRING | ORUFI10G19430.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | ONIVA10G20780.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4621 | 29 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45050.1 | 2e-45 | GATA transcription factor 2 |
Publications ? help Back to Top | |||
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