PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA10G13440.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 386aa    MW: 39440.3 Da    PI: 6.7726
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA10G13440.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.39.2e-18255289135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  ONIVA10G13440.1 255 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 289
                      99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.3E-18249299IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.479249285IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.5E-15250286IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.57E-15251312No hitNo description
CDDcd002024.51E-14254301No hitNo description
PfamPF003201.4E-15255289IPR000679Zinc finger, GATA-type
PROSITE patternPS003440255280IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MEVAAADYAG GVRVKKEAGG CGGSGDMFLV DDLLDLPCDE EEEETGLCGA YGGGGAGLGA  60
GVVGGGGDDR AAGNASADSS TVTAVDSCSN SFSGLADGDF SGGLCEPYEQ LAELEWVSTY  120
MGEETLPTED LRKLQLISGI PAAPRAPPAL AVSAVQLPAG GAGALPTEAP VPGKARSKRS  180
RVAPCSWSSR LMVLPPPPAS PPSPASAVIS PSESGTAAPA FPAKKAAKSA KKKDGPSPAP  240
APNAAAQAAA EGRRCLHCET DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT  300
FVVSKHSNSH RKVVELRRQK EMQLLHHHQQ PPPHVGAGGG GAAGGLLHVT SPLLFDGPTS  360
SAPLFAGADE FLIHNRISPD YRRQAT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8376640.0CT837664.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA206K19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638019.10.0GATA transcription factor 12
TrEMBLA0A0E0ITL20.0A0A0E0ITL2_ORYNI; GATA transcription factor
TrEMBLA2Y6M00.0A2Y6M0_ORYSI; GATA transcription factor
TrEMBLQ6F2Z70.0Q6F2Z7_ORYSJ; GATA transcription factor
STRINGOS05T0520300-000.0(Oryza sativa)
STRINGONIVA10G13440.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30253178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.15e-46GATA transcription factor 12