![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | ONIVA10G13440.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 386aa MW: 39440.3 Da PI: 6.7726 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 55.3 | 9.2e-18 | 255 | 289 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l ONIVA10G13440.1 255 CLHCETDKTPQWRTGPMGPKTLCNACGVRYKSGRL 289 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.3E-18 | 249 | 299 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.479 | 249 | 285 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 6.5E-15 | 250 | 286 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 1.57E-15 | 251 | 312 | No hit | No description |
CDD | cd00202 | 4.51E-14 | 254 | 301 | No hit | No description |
Pfam | PF00320 | 1.4E-15 | 255 | 289 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 255 | 280 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 386 aa Download sequence Send to blast |
MEVAAADYAG GVRVKKEAGG CGGSGDMFLV DDLLDLPCDE EEEETGLCGA YGGGGAGLGA 60 GVVGGGGDDR AAGNASADSS TVTAVDSCSN SFSGLADGDF SGGLCEPYEQ LAELEWVSTY 120 MGEETLPTED LRKLQLISGI PAAPRAPPAL AVSAVQLPAG GAGALPTEAP VPGKARSKRS 180 RVAPCSWSSR LMVLPPPPAS PPSPASAVIS PSESGTAAPA FPAKKAAKSA KKKDGPSPAP 240 APNAAAQAAA EGRRCLHCET DKTPQWRTGP MGPKTLCNAC GVRYKSGRLV PEYRPAASPT 300 FVVSKHSNSH RKVVELRRQK EMQLLHHHQQ PPPHVGAGGG GAAGGLLHVT SPLLFDGPTS 360 SAPLFAGADE FLIHNRISPD YRRQAT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CT837664 | 0.0 | CT837664.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA206K19, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015638019.1 | 0.0 | GATA transcription factor 12 | ||||
TrEMBL | A0A0E0ITL2 | 0.0 | A0A0E0ITL2_ORYNI; GATA transcription factor | ||||
TrEMBL | A2Y6M0 | 0.0 | A2Y6M0_ORYSI; GATA transcription factor | ||||
TrEMBL | Q6F2Z7 | 0.0 | Q6F2Z7_ORYSJ; GATA transcription factor | ||||
STRING | OS05T0520300-00 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA10G13440.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3025 | 31 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25830.1 | 5e-46 | GATA transcription factor 12 |